Factsheet for Os01t0681100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0681100-01
Os02t0738900-01
Os03t0736500-01
Os05t0556100-01
Os06t0247800-01
Os08t0425100-01
Os08t0537600-01
Os09t0510700-01
Os10t0362300-03
Os12t0192300-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42080.1	Os03t0736500-01	AT1G08560.1	19959995
AT5G42080.1	Os12t0192300-00	AT1G08560.1	19959995
AT5G42080.1	Os02t0738900-01	AT1G59610.1	20231465
AT5G42080.1	Os06t0247800-01	AT1G59610.1	20231465
AT5G42080.1	Os08t0425100-01	AT1G59610.1	20231465
AT5G42080.1	Os08t0537600-01	AT5G13300.1	15923323
AT5G42080.1	Os09t0510700-01	AT5G13300.1	15923323
AT5G42080.1	Os10t0362300-03	AT5G35750.1	18642946
AT5G42080.1	Os01t0681100-01	AT5G42080.1	19144001
AT5G42080.1	Os05t0556100-01	AT5G42080.1	19144001
AT5G42080.1	Os01t0681100-01	AT5G42080.1	20231465
AT5G42080.1	Os05t0556100-01	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0556100-01	Rice	plasma membrane	86.96	26.27
EES01270	Sorghum	cytosol	85.33	25.78
GSMUA_Achr8P27540_001	Banana	cytosol	83.7	25.29
Bra025448.1-P	Field mustard	cytosol	79.89	25.21
Solyc01g095970.2.1	Tomato	plastid	82.61	24.92
PGSC0003DMT400000646	Potato	cytosol	82.61	24.92
KRH77654	Soybean	endoplasmic reticulum	82.61	24.92
VIT_02s0025g01570.t01	Wine grape	cytosol, extracellular	82.07	24.79
Solyc05g050600.2.1	Tomato	nucleus, plastid	82.07	24.79
GSMUA_Achr6P26600_001	Banana	cytosol	82.07	24.79
KRH60047	Soybean	endoplasmic reticulum	82.07	24.75
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	82.07	24.75
KRH41321	Soybean	endoplasmic reticulum, nucleus	81.52	24.59
AT5G42080.1	Thale cress	cytosol	80.98	24.43
CDY25074	Canola	cytosol	80.43	24.26
CDX67862	Canola	cytosol	80.43	24.26
CDY13364	Canola	cytosol	80.43	24.26
CDY27661	Canola	cytosol	79.89	24.1
Bra028525.1-P	Field mustard	cytosol	79.89	24.1
CDX67529	Canola	cytosol	79.89	24.1
KRH47905	Soybean	cytosol, endoplasmic reticulum	79.35	23.97
CDX99702	Canola	cytosol	79.35	23.93
AT3G61760.1	Thale cress	cytosol	79.35	23.93
Os09t0572900-01	Rice	cytosol, plasma membrane	75.54	22.2
Os10t0567800-01	Rice	plasma membrane	73.91	22.01
Os03t0713100-01	Rice	plasma membrane	70.65	21.28
Bra003469.1-P	Field mustard	cytosol	65.22	20.87
KRH06461	Soybean	cytosol	35.87	12.72
Os01t0920400-01	Rice	nucleus, plastid	48.37	10.88
Os03t0260000-01	Rice	cytosol	39.13	10.62
Os04t0129900-01	Rice	cytosol	38.04	10.23
Os04t0381000-01	Rice	cytosol	44.02	9.98
Os12t0178700-01	Rice	cytosol	25.54	8.41
Os01t0748000-00	Rice	plastid	29.35	6.57
Os08t0425100-01	Rice	plasma membrane	22.28	5.35
Os06t0247800-01	Rice	plasma membrane	22.28	4.5
Os02t0738900-01	Rice	plasma membrane	22.28	4.44

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0P0V6L3	ProteinID:BAS73709.1	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS
InterPro:Dynamin_SF	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR030381	EnsemblPlantsGene:Os01g0681100	EnsemblPlants:Os01t0681100-01
InterPro:P-loop_NTPase	PFAM:PF00350	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS51718	PANTHER:PTHR11566
PANTHER:PTHR11566:SF138	SMART:SM00053	SUPFAM:SSF52540	UniParc:UPI000393A829	SEG:seg	:

Description

dynamin-related protein 1BSimilar to Dynamin-related protein 1B (Dynamin-like protein B). (Os01t0681100-01)

Coordinates

chr1:+:28054939..28060593

Molecular Weight (calculated)

20307.6 Da

IEP (calculated)

6.356

GRAVY (calculated)

-0.021

Length

184 amino acids

Sequence
(BLAST)

001: MENLISLVNK LQRACTALGD HGEESALPTL WDSLPAIAVV GGQSSGKSSV LESVVGKDFL PRGSGIVTRR PLVLQLHRIN GDREYAEFMH NPTVKYTDFA
101: LVRKEIADET ERATGHKKQI SPVPIYLSIY SPNVVDLTLI DLPGLTKVAV EGQSDSIVQD IETMVRSFIE KVLLNNLHKF FLLP

Best Arabidopsis Sequence Match ( AT3G61760.3 )
(BLAST)

001: MESLIALVNK IQRACTALGD HGEGSSLPTL WDSLPAIAVV GGQSSGKSSV LESVVGKDFL PRGAGIVTRR PLVLQLHRID EGKEYAEFMH LPKKKFTDFA
101: AVRQEISDET DRETGRSSKV ISTVPIHLSI FSPNVVNLTL VDLPGLTKVA VDGQPESIVQ DIENMVRSFI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PKGDRTFGVL TKIDLMDQGT NAVDILEGRG YKLRYPWVGV VNRSQADINK SVDMIAARRR ERDYFQTSPE YRHLTERMGS EYLGKMLSKH LEVVIKSRIP
301: GLQSLITKTI SELETELSRL GKPVAADAGG KLYMIMEICR AFDQTFKEHL DGTRSGGEKI NSVFDNQFPA AIKRLQFDKH LSMDNVRKLI TEADGYQPHL
401: IAPEQGYRRL IESCLVSIRG PAEAAVDAVH SILKDLIHKS MGETSVRISL LKVINPTTTI TLMSFEA

Arabidopsis Description

DRP1BDL1B [Source:UniProtKB/TrEMBL;Acc:A0A178VE87]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.