Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 5
- cytosol 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G147100.1 | Wheat | cytosol | 66.95 | 76.14 |
| TraesCS6D01G136400.1 | Wheat | cytosol | 66.38 | 75.49 |
| TraesCS6B01G175300.1 | Wheat | cytosol | 65.8 | 74.84 |
| HORVU6Hr1G028850.1 | Barley | cytosol | 65.8 | 74.84 |
| Zm00001d035331_P001 | Maize | cytosol | 53.74 | 62.75 |
| OQU78880 | Sorghum | cytosol | 54.02 | 61.04 |
| GSMUA_Achr1P25170_001 | Banana | cytosol | 26.15 | 37.14 |
| Os03t0736500-01 | Rice | cytosol, plasma membrane | 29.31 | 32.8 |
| Os07t0528900-00 | Rice | cytosol, extracellular, plasma membrane | 10.34 | 32.43 |
| Os02t0209900-01 | Rice | cytosol | 27.3 | 30.55 |
| Solyc06g053760.2.1 | Tomato | cytosol | 27.3 | 30.55 |
| PGSC0003DMT400041982 | Potato | cytosol | 27.3 | 30.55 |
| KRH08461 | Soybean | cytosol | 28.16 | 30.43 |
| KRH70119 | Soybean | cytosol | 27.3 | 29.87 |
| VIT_04s0008g02770.t01 | Wine grape | cytosol | 26.44 | 29.58 |
| CDX97497 | Canola | cytosol | 23.85 | 27.39 |
| CDY31137 | Canola | cytosol | 23.56 | 26.97 |
| Bra030733.1-P | Field mustard | cytosol | 23.56 | 26.97 |
| CDX93553 | Canola | cytosol | 22.99 | 26.06 |
| Bra018615.1-P | Field mustard | cytosol | 22.7 | 25.73 |
| AT1G08560.1 | Thale cress | cytosol | 22.7 | 25.48 |
| Os03t0787000-01 | Rice | plasma membrane | 24.14 | 25.45 |
| CDX95050 | Canola | cytosol | 22.41 | 25.41 |
| Os06t0168500-01 | Rice | plasma membrane | 20.69 | 23.61 |
Protein Annotations
| Gene3D:1.20.58.70 | EntrezGene:107276534 | MapMan:22.7.1.1 | UniProt:A0A0P0Y804 | ProteinID:BAT16213.1 | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 |
| InterPro:IPR000727 | EnsemblPlantsGene:Os12g0192300 | EnsemblPlants:Os12t0192300-00 | PFAM:PF00804 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF155 | SMART:SM00397 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI000393A5C0 | RefSeq:XP_015619443.1 | SEG:seg | : | : |
Description
Similar to SNARE domain containing protein, expressed. (Os12t0192300-00)
Coordinates
chr12:-:4698412..4699458
Molecular Weight (calculated)
36384.6 Da
IEP (calculated)
9.858
GRAVY (calculated)
-0.115
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGYLIKSKF QPNNSTSPSP SSLIEKKWKK KSAFFVAPDL RDRSQQSPPI APKMNDLMTD SFVGAAAAAA APLDRQDGGG GPGDQKLEAF LREAEAAKDE
101: MAALRDELSR LQAAHEASKA LLRPGAPRAA TQAALVRLIG SAGRLRARLA SMDRRAPAPA TTAATAGLRG RLQDLTAGVQ VLRRQVSAER RGDAARCYLA
201: VAGEAPTEEQ LDRLVAAGGA NTDAEAAVRA AMKSSSEAEE VEGGLLELQQ LFLDMAALVE SQGARVDDIE RHVAAAAGDV GAAEGELREA QRLRVAARRR
301: RLWLSAGLAV LLLVVLAAAA AALALALARR KGGATQLAAD AADLAAFL
101: MAALRDELSR LQAAHEASKA LLRPGAPRAA TQAALVRLIG SAGRLRARLA SMDRRAPAPA TTAATAGLRG RLQDLTAGVQ VLRRQVSAER RGDAARCYLA
201: VAGEAPTEEQ LDRLVAAGGA NTDAEAAVRA AMKSSSEAEE VEGGLLELQQ LFLDMAALVE SQGARVDDIE RHVAAAAGDV GAAEGELREA QRLRVAARRR
301: RLWLSAGLAV LLLVVLAAAA AALALALARR KGGATQLAAD AADLAAFL
001: MNDLMTKSFM SYVDLKKAAM KDMEAGPDFD LEMASTKADK MDENLSSFLE EAEYVKAEMG LISETLARIE QYHEESKGVH KAESVKSLRN KISNEIVSGL
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
Arabidopsis Description
KNSYP111 [Source:UniProtKB/TrEMBL;Acc:A0A178WAC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.