Factsheet for Os06t0168500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16084	Sorghum	cytosol	86.89	86.32
TraesCS5A01G096800.1	Wheat	cytosol	83.93	83.66
TraesCS5D01G109500.1	Wheat	cytosol	83.93	83.66
TraesCS5B01G102700.1	Wheat	cytosol	83.61	83.33
Zm00001d041716_P002	Maize	cytosol	86.56	83.28
HORVU5Hr1G026120.1	Barley	cytosol	83.28	83.01
Solyc01g056810.2.1	Tomato	cytosol	56.39	67.98
VIT_08s0032g00440.t01	Wine grape	cytosol	64.92	64.5
CDY21160	Canola	cytosol	27.87	63.91
Bra005968.1-P	Field mustard	cytosol	63.28	63.49
PGSC0003DMT400072284	Potato	cytosol	64.26	63.23
Bra009318.1-P	Field mustard	cytosol	62.62	63.04
Solyc10g081580.1.1	Tomato	cytosol, plastid	63.93	62.9
KRH08507	Soybean	cytosol	63.28	62.66
CDY50666	Canola	cytosol	27.54	62.22
CDY51747	Canola	cytosol	27.54	62.22
Bra028672.1-P	Field mustard	cytosol	61.64	62.05
GSMUA_Achr2P17410_001	Banana	cytosol	59.34	61.36
AT5G08080.3	Thale cress	cytosol	63.28	61.27
AT3G03800.1	Thale cress	cytosol	60.98	60.78
KRH70169	Soybean	cytosol	28.85	59.86
CDY29963	Canola	cytosol	59.02	58.06
Bra031972.1-P	Field mustard	cytosol	52.46	57.14
GSMUA_Achr7P16680_001	Banana	plasma membrane	68.85	56.15
Os07t0528900-00	Rice	cytosol, extracellular, plasma membrane	20.33	55.86
CDY50665	Canola	cytosol	31.8	55.75
Bra036431.1-P	Field mustard	cytosol	50.49	55.4
CDY51748	Canola	cytosol	32.13	55.37
CDY21161	Canola	cytosol	31.15	53.07
Os02t0209900-01	Rice	cytosol	42.62	41.8
Os03t0787000-01	Rice	plasma membrane	44.59	41.21
Os03t0736500-01	Rice	cytosol, plasma membrane	38.36	37.62
Os12t0192300-00	Rice	plasma membrane	23.61	20.69

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.1	EntrezGene:4340257	ProteinID:BAD67617.1	ProteinID:BAD67969.1
ProteinID:BAF18839.1	ProteinID:BAS96357.1	ncoils:Coil	ProteinID:EEE65167.1	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0006887	GO:GO:0006906
GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0031201	GO:GO:0048278	GO:GO:0061025	InterPro:IPR000727	EnsemblPlantsGene:Os06g0168500
EnsemblPlants:Os06t0168500-01	PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF153	UniProt:Q5VRF6	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661
InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000045792A	RefSeq:XP_015641400.1
SEG:seg	:	:	:	:	:

Description

Similar to Syntaxin-like protein (Fragment). (Os06t0168500-01)

Coordinates

chr6:-:3445034..3448312

Molecular Weight (calculated)

34650.7 Da

IEP (calculated)

6.828

GRAVY (calculated)

-0.509

Length

305 amino acids

Sequence
(BLAST)

001: MRNLLTDSFE LSKVDQAPAN VDIELGLQGG MSSSAQPGFE GFFEQVREIE KLHETLTKLL KDLQNSNEES KIVTKASAMK EIKKRMEKDV NEVTKTARLA
101: KSKVEKLNKD NAANREKPGF GKGSGVDRSR TTTTVSLTKR LRERISEFQT LREAIQKEYR DVVERRVFTV TGERADEETI DKLIETGDSE QIFQRAIQEQ
201: GRGRVLDTLQ EIQERHDAVK EIEQKLLELQ QIFLDMSVLV EAQGEILDNI ESQVSGAAEH IQTGTNLLQK ARFLQKNTRK WTCIGIVILL IIILIVVLSL
301: KPWSK

Best Arabidopsis Sequence Match ( AT5G08080.1 )
(BLAST)

001: MNDLLKGSFE LPRGQSSREG DVELGEQQGG DQGLEDFFKK VQVIDKQYDK LDKLLKKLQA SHEESKSVTK APAMKAIKKT MEKDVDEVGS IARFIKGKLE
101: ELDRENLANR QKPGCAKGSG VDRSRTATTL SLKKKLKDKM AEFQVLRENI QQEYRDVVDR RVYTVTGERA DEDTIDELIE TGNSEQIFQK AIQEQGRGQV
201: MDTLAEIQER HDAVRDLEKK LLDLQQIFLD MAVLVDAQGE MLDNIESQVS SAVDHVQSGN TALQRAKSLQ KNSRKWMCIA IIILLIVVAV IVVGVLKPWK
301: NKSA

Arabidopsis Description

SYP132Syntaxin of plants 132 [Source:UniProtKB/TrEMBL;Acc:F4K9K2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.