Factsheet for Bra005968.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009318.1-P	Field mustard	cytosol	97.37	97.69
Bra028672.1-P	Field mustard	cytosol	94.74	95.05
AT5G08080.3	Thale cress	cytosol	94.41	91.11
Solyc01g056810.2.1	Tomato	cytosol	68.09	81.82
PGSC0003DMT400072284	Potato	cytosol	79.28	77.74
Solyc10g081580.1.1	Tomato	cytosol, plastid	79.28	77.74
Bra031972.1-P	Field mustard	cytosol	67.11	72.86
Bra036431.1-P	Field mustard	cytosol	65.46	71.58
GSMUA_Achr2P01540_001	Banana	cytosol	68.42	69.8
GSMUA_Achr2P17410_001	Banana	cytosol	66.78	68.81
EER98026	Sorghum	cytosol	67.76	67.99
TraesCS2D01G248900.1	Wheat	cytosol	67.11	67.55
TraesCS2B01G263700.1	Wheat	cytosol	67.11	67.55
Zm00001d007902_P001	Maize	mitochondrion, plasma membrane	67.43	67.43
TraesCS7B01G394300.1	Wheat	cytosol	67.43	67.43
TraesCS7A01G481800.1	Wheat	cytosol	65.79	65.79
HORVU6Hr1G095330.1	Barley	cytosol	64.8	65.45
HORVU5Hr1G026120.1	Barley	cytosol	64.8	64.38
TraesCS5B01G034800.1	Wheat	cytosol	63.16	63.37
Os06t0168500-01	Rice	plasma membrane	63.49	63.28
TraesCS5A01G096800.1	Wheat	cytosol	63.16	62.75
TraesCS5D01G109500.1	Wheat	cytosol	63.16	62.75
TraesCS5B01G102700.1	Wheat	cytosol	62.83	62.42
GSMUA_Achr7P16680_001	Banana	plasma membrane	75.66	61.5
TraesCS5B01G035600.1	Wheat	cytosol	62.5	61.49
EES16084	Sorghum	cytosol	61.84	61.24
Zm00001d041716_P002	Maize	cytosol	63.49	60.88
TraesCS2A01G246600.1	Wheat	cytosol	66.45	60.66
HORVU2Hr1G057350.2	Barley	cytosol	65.13	60.18
Bra031761.1-P	Field mustard	cytosol	28.95	53.33
Zm00001d018867_P002	Maize	plastid	68.09	52.94
Bra031760.1-P	Field mustard	cytosol, nucleus, plasma membrane	16.78	49.04
Bra034202.1-P	Field mustard	cytosol	49.01	48.85
Bra031759.1-P	Field mustard	cytosol	46.38	47.32
Bra019872.1-P	Field mustard	cytosol	46.05	46.98
Bra016846.1-P	Field mustard	cytosol	46.05	46.98
Bra001422.1-P	Field mustard	cytosol	49.67	45.35
Bra034808.1-P	Field mustard	cytosol, nucleus, plastid	47.37	44.31
Bra033436.1-P	Field mustard	cytosol	47.7	42.4
Bra012806.1-P	Field mustard	cytosol, nucleus, peroxisome	42.43	41.88
Bra018615.1-P	Field mustard	cytosol	37.17	36.81
Bra030733.1-P	Field mustard	cytosol	36.51	36.51
Bra039622.1-P	Field mustard	cytosol	30.59	32.29
Bra024476.1-P	Field mustard	cytosol	29.61	31.47
TraesCS1A01G088800.1	Wheat	cytosol	28.95	30.66
TraesCS5A01G240200.3	Wheat	mitochondrion	21.71	29.86

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.1	EnsemblPlantsGene:Bra005968	EnsemblPlants:Bra005968.1	EnsemblPlants:Bra005968.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:IPR000727
UniProt:M4CP30	PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF153	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS
InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000253F739	SEG:seg	:

Description

AT5G08080 (E=2e-128) SYP132, ATSYP132 | SYP132 (SYNTAXIN OF PLANTS 132); SNAP receptor

Coordinates

chrA03:+:1436700..1439227

Molecular Weight (calculated)

34237.3 Da

IEP (calculated)

7.510

GRAVY (calculated)

-0.561

Length

304 amino acids

Sequence
(BLAST)

001: MNDLLKGSFE LPRGQSSREG DVELGEQGAA DQGLDDFFKK VQDIDKQYEK LNKLLKKLQA AHEESKAVTK APAMKAIKKK MEKDVDEVGS IARFIKGKLE
101: ELDRENLANR QKPGCGKGSG VDRSRTATTL SLKKKLKDKM AEFQVLRENI QQEYREVVDR RVFTVTGQRA DEDTIDELIE TGNSEQIFQK AIQEQGRGQV
201: MDTLAEIQER HDAVRDLEKK LLDLQQIFMD MAVLVDAQGE MLDNIESQVS SAVDHVQSGN TALQRAKSLQ KNSRKWMCIA IIILLIVVAV IVVGVLKPWK
301: DKKA

Best Arabidopsis Sequence Match ( AT5G08080.1 )
(BLAST)

001: MNDLLKGSFE LPRGQSSREG DVELGEQQGG DQGLEDFFKK VQVIDKQYDK LDKLLKKLQA SHEESKSVTK APAMKAIKKT MEKDVDEVGS IARFIKGKLE
101: ELDRENLANR QKPGCAKGSG VDRSRTATTL SLKKKLKDKM AEFQVLRENI QQEYRDVVDR RVYTVTGERA DEDTIDELIE TGNSEQIFQK AIQEQGRGQV
201: MDTLAEIQER HDAVRDLEKK LLDLQQIFLD MAVLVDAQGE MLDNIESQVS SAVDHVQSGN TALQRAKSLQ KNSRKWMCIA IIILLIVVAV IVVGVLKPWK
301: NKSA

Arabidopsis Description

SYP132Syntaxin of plants 132 [Source:UniProtKB/TrEMBL;Acc:F4K9K2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.