Factsheet for Bra031760.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031761.1-P	Field mustard	cytosol	100.0	63.03
CDY34843	Canola	cytosol	100.0	34.9
Bra031759.1-P	Field mustard	cytosol	100.0	34.9
Bra016846.1-P	Field mustard	cytosol	99.04	34.56
Bra019872.1-P	Field mustard	cytosol	97.12	33.89
AT1G11250.1	Thale cress	cytosol	96.15	33.56
GSMUA_Achr6P04820_001	Banana	cytosol	70.19	28.74
KRH10761	Soybean	cytosol	83.65	28.62
KRH21567	Soybean	cytosol	82.69	28.29
KRH41917	Soybean	cytosol	81.73	27.96
GSMUA_Achr10P...	Banana	cytosol	71.15	26.52
VIT_12s0059g02060.t01	Wine grape	cytosol	74.04	25.25
PGSC0003DMT400055777	Potato	cytosol	75.0	25.08
Solyc12g005580.1.1	Tomato	cytosol	74.04	24.84
PGSC0003DMT400035739	Potato	cytosol	74.04	24.84
EER89986	Sorghum	cytosol	70.19	23.62
Zm00001d036931_P001	Maize	cytosol	70.19	23.62
Zm00001d046482_P001	Maize	cytosol	70.19	23.62
Bra034202.1-P	Field mustard	cytosol	67.31	22.95
TraesCS6B01G211000.1	Wheat	cytosol	65.38	22.3
TraesCS6D01G169800.1	Wheat	cytosol	65.38	22.3
TraesCS7B01G260100.1	Wheat	cytosol	64.42	21.9
Os02t0209900-01	Rice	cytosol	65.38	21.86
TraesCS7A01G368400.1	Wheat	cytosol	62.5	21.24
TraesCS7D01G354500.1	Wheat	cytosol	61.54	20.91
Zm00001d053607_P001	Maize	cytosol	59.62	19.81
Bra034808.1-P	Field mustard	cytosol, nucleus, plastid	61.54	19.69
EES06503	Sorghum	cytosol	59.62	19.68
Bra001422.1-P	Field mustard	cytosol	61.54	19.22
Bra036431.1-P	Field mustard	cytosol	50.0	18.7
Bra031972.1-P	Field mustard	cytosol	50.0	18.57
Bra033436.1-P	Field mustard	cytosol	59.62	18.13
TraesCS6A01G182200.1	Wheat	cytosol	64.42	17.72
Bra012806.1-P	Field mustard	cytosol, nucleus, peroxisome	50.96	17.21
Bra028672.1-P	Field mustard	cytosol	49.04	16.83
Bra009318.1-P	Field mustard	cytosol	49.04	16.83
Bra005968.1-P	Field mustard	cytosol	49.04	16.78
Bra018615.1-P	Field mustard	cytosol	49.04	16.61
Bra030733.1-P	Field mustard	cytosol	47.12	16.12
Bra024476.1-P	Field mustard	cytosol	40.38	14.69
Bra039622.1-P	Field mustard	cytosol	38.46	13.89
HORVU7Hr1G085550.1	Barley	cytosol	12.5	4.13
HORVU6Hr1G038490.4	Barley	nucleus	9.62	3.17

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.1	EnsemblPlantsGene:Bra031760	EnsemblPlants:Bra031760.1	EnsemblPlants:Bra031760.1-P	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0061025	InterPro:IPR000727	UniProt:M4ESI1	PFAM:PF00804	PFAM:PF05739
ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF198	SMART:SM00397	SUPFAM:SSF58038
InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00025430DF	SEG:seg

Description

AT1G11250 (E=3e-041) SYP125, ATSYP125 | SYP125 (SYNTAXIN OF PLANTS 125); SNAP receptor

Coordinates

chrA09:-:34875595..34875909

Molecular Weight (calculated)

12019.8 Da

IEP (calculated)

6.512

GRAVY (calculated)

0.077

Length

104 amino acids

Sequence
(BLAST)

001: MDTISEIQER HDAVKEIEKN LLELHQVFLD MAALVEAQGQ QLNNIESHVA KASSFVRRGT EQLQDAREYQ KSSRKWTCYA IILFIVVFIL LLIPALPHIM
101: LMLK

Best Arabidopsis Sequence Match ( AT1G11250.1 )
(BLAST)

001: MNDLFSNSFK KNQAQLGDVE AGQETMNLDK FFEDVENVKD DMKGVEALYK KLQDSNEECK TVHNAKKVKE LRAKMDGDVA MVLKRVKIIK QKLEALEKAN
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK

Arabidopsis Description

SYP125Syntaxin-125 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXB0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.