Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G354500.1 | Wheat | cytosol | 97.71 | 97.71 |
| TraesCS7B01G260100.1 | Wheat | cytosol | 97.06 | 97.06 |
| Zm00001d046482_P001 | Maize | cytosol | 79.08 | 78.32 |
| Zm00001d036931_P001 | Maize | cytosol | 78.43 | 77.67 |
| EER89986 | Sorghum | cytosol | 78.43 | 77.67 |
| Bra031761.1-P | Field mustard | cytosol | 36.27 | 67.27 |
| KRH10761 | Soybean | cytosol | 65.69 | 66.12 |
| KRH21567 | Soybean | cytosol | 65.69 | 66.12 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 66.34 | 65.91 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 54.58 | 65.75 |
| CDY34656 | Canola | cytosol | 63.73 | 65.44 |
| CDY34843 | Canola | cytosol | 63.73 | 65.44 |
| AT1G61290.2 | Thale cress | cytosol | 64.71 | 65.35 |
| CDY20986 | Canola | cytosol | 63.4 | 65.1 |
| Bra031759.1-P | Field mustard | cytosol | 63.4 | 65.1 |
| GSMUA_Achr10P... | Banana | cytosol | 59.15 | 64.87 |
| AT1G11250.1 | Thale cress | cytosol | 63.07 | 64.77 |
| KRH41917 | Soybean | cytosol | 64.05 | 64.47 |
| CDX97943 | Canola | cytosol | 62.75 | 64.43 |
| Bra016846.1-P | Field mustard | cytosol | 62.75 | 64.43 |
| Bra019872.1-P | Field mustard | cytosol | 62.75 | 64.43 |
| CDY70107 | Canola | cytosol | 62.75 | 64.43 |
| CDY19350 | Canola | cytosol | 62.42 | 64.09 |
| PGSC0003DMT400035739 | Potato | cytosol | 64.71 | 63.87 |
| Solyc12g005580.1.1 | Tomato | cytosol | 64.71 | 63.87 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 63.07 | 63.28 |
| PGSC0003DMT400055777 | Potato | cytosol | 64.05 | 63.02 |
| Bra034202.1-P | Field mustard | cytosol | 62.42 | 62.62 |
| CDY48554 | Canola | cytosol | 62.42 | 62.62 |
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 21.24 | 62.5 |
| CDY21958 | Canola | cytosol | 62.09 | 62.3 |
| AT4G03330.1 | Thale cress | cytosol | 61.76 | 61.97 |
| TraesCS6A01G182200.1 | Wheat | cytosol | 71.9 | 58.2 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 49.02 | 47.32 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 45.75 | 44.44 |
| TraesCS2A01G219200.1 | Wheat | cytosol | 42.16 | 42.57 |
| TraesCS5A01G096800.1 | Wheat | cytosol | 42.48 | 42.48 |
| TraesCS7A01G481800.1 | Wheat | cytosol | 41.83 | 42.11 |
| TraesCS4A01G247700.1 | Wheat | cytosol | 40.2 | 38.92 |
| TraesCS2A01G246600.1 | Wheat | cytosol | 40.2 | 36.94 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 37.25 | 36.19 |
| TraesCS6A01G147100.1 | Wheat | cytosol | 26.14 | 26.14 |
| TraesCS1A01G088800.1 | Wheat | cytosol | 23.2 | 24.74 |
| TraesCS2A01G213400.1 | Wheat | cytosol | 18.63 | 21.27 |
| TraesCS5A01G240200.3 | Wheat | mitochondrion | 15.36 | 21.27 |
Protein Annotations
| Gene3D:1.20.58.70 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | InterPro:IPR000727 | PFAM:PF00804 | PFAM:PF05739 |
| ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF198 | SMART:SM00397 | SMART:SM00503 |
| InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| EnsemblPlantsGene:TraesCS7A01G368400 | EnsemblPlants:TraesCS7A01G368400.1 | TIGR:cd00179 | TIGR:cd15848 | SEG:seg | : |
Description
No Description!
Coordinates
chr7A:-:541454010..541455043
Molecular Weight (calculated)
33870.1 Da
IEP (calculated)
5.859
GRAVY (calculated)
-0.441
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSSSSF KKYADANPET SAADMEAGGM NGANLDQFFS DVEAVKEDLK GFETLHKRLQ STNEETKTAH DARTIKALRS RMDGDVEQVL KRAKAVKAKL
101: EALKSDNANS RKAPDWGPGS SVDRTRTSVV AGLGKKLKDI MDDFQGLRAK MAAEYKETVA RRYFTVTGEH AEESTIDSLI SSGESESFLQ KAIQDQGRGQ
201: VMDTISEIQE RSDAVKDIER SLMDLHQVFQ DMAALVEAQG HQLNDIESHV AHASSFVRRG TVELEQAHEI QKDTRKWMCF AVLGGIALVV VLVTPVLINL
301: HILTLR
101: EALKSDNANS RKAPDWGPGS SVDRTRTSVV AGLGKKLKDI MDDFQGLRAK MAAEYKETVA RRYFTVTGEH AEESTIDSLI SSGESESFLQ KAIQDQGRGQ
201: VMDTISEIQE RSDAVKDIER SLMDLHQVFQ DMAALVEAQG HQLNDIESHV AHASSFVRRG TVELEQAHEI QKDTRKWMCF AVLGGIALVV VLVTPVLINL
301: HILTLR
001: MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
Arabidopsis Description
SYP124Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.