Factsheet for AT4G03330.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21958	Canola	cytosol	92.46	92.46
Bra034202.1-P	Field mustard	cytosol	92.46	92.46
CDY48554	Canola	cytosol	91.8	91.8
AT1G61290.2	Thale cress	cytosol	67.87	68.32
AT1G11250.1	Thale cress	cytosol	65.57	67.11
TraesCS6D01G169800.1	Wheat	cytosol	65.25	65.25
TraesCS6B01G211000.1	Wheat	cytosol	65.25	65.25
GSMUA_Achr10P...	Banana	cytosol	57.7	63.08
TraesCS7B01G260100.1	Wheat	cytosol	62.95	62.75
GSMUA_Achr6P04820_001	Banana	cytosol	52.13	62.6
Zm00001d053607_P001	Maize	cytosol	63.93	62.3
EES06503	Sorghum	cytosol	64.26	62.22
Zm00001d036931_P001	Maize	cytosol	62.62	61.81
TraesCS7A01G368400.1	Wheat	cytosol	61.97	61.76
Os02t0209900-01	Rice	cytosol	62.95	61.74
EER89986	Sorghum	cytosol	62.3	61.49
Zm00001d046482_P001	Maize	cytosol	61.97	61.16
TraesCS7D01G354500.1	Wheat	cytosol	60.98	60.78
TraesCS6A01G182200.1	Wheat	cytosol	65.25	52.65
AT3G11820.1	Thale cress	cytosol, nucleus, plastid	57.05	50.29
AT3G52400.1	Thale cress	cytosol	51.48	46.04
AT5G08080.3	Thale cress	cytosol	45.9	44.44
AT3G03800.1	Thale cress	cytosol	43.61	43.46
AT1G08560.1	Thale cress	cytosol	43.93	43.23
AT2G18260.1	Thale cress	cytosol	36.07	36.07
HORVU7Hr1G085550.1	Barley	cytosol	35.08	33.97
HORVU6Hr1G038490.4	Barley	nucleus	34.75	33.65

Protein Annotations

Gene3D:1.20.58.70	MapMan:22.7.1.1	EntrezGene:827970	UniProt:A0A178V4Y6	ProteinID:AAD14461.1	ProteinID:ADM21178.1
ProteinID:AEE82307.1	EMBL:AK229042	ArrayExpress:AT4G03330	EnsemblPlantsGene:AT4G03330	RefSeq:AT4G03330	TAIR:AT4G03330
RefSeq:AT4G03330-TAIR-G	EnsemblPlants:AT4G03330.1	TAIR:AT4G03330.1	EMBL:AY087693	Unigene:At.34195	EMBL:BT044612
ProteinID:CAB77818.1	ncoils:Coil	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886
GO:GO:0006810	GO:GO:0006886	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987
GO:GO:0012505	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	GO:GO:0048278	GO:GO:0061025	InterPro:IPR000727	RefSeq:NP_192242.1	ProteinID:OAP00143.1
PFAM:PF00804	PFAM:PF05739	PO:PO:0000256	PO:PO:0000262	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF198	UniProt:Q0WPM4	UniProt:Q9ZQZ8	SMART:SM00397	SMART:SM00503
InterPro:SNARE	SUPFAM:SSF47661	Symbol:SYP123	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI000013541C	SEG:seg	:	:	:

Description

SYP123SYP123 [Source:UniProtKB/TrEMBL;Acc:A0A178V4Y6]

Coordinates

chr4:+:1466284..1467750

Molecular Weight (calculated)

34485.4 Da

IEP (calculated)

7.666

GRAVY (calculated)

-0.435

Length

305 amino acids

Sequence
(BLAST)

001: MNDLISSSFK RYTDLNHQVQ LDDIESQNVS LDSGNLDEFF GYVESVKEDM KAVDEIHKRL QDANEESKTV HDSKAVKKLR ARMDSSVTEV LKRVKMIKTK
101: LVALEKSNAA QRKVAGCGPG SSADRTRTSV VSGLGKKLKD MMDDFQRLRT KMATEYKETV ERRYFTVTGQ KADEETVEKL ISSGESERFL QKAIQEQGRG
201: QVMDTLSEIQ ERHDTVKEIE RSLLELHQVF LDMAALVEAQ GNMLNDIESN VSKASSFVMR GTDQLHGAKV LQRNNRKWAC IATILAIVVV IVILFPILFN
301: TLLRP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.