Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G368400.1 | Wheat | cytosol | 97.71 | 97.71 |
| TraesCS7B01G260100.1 | Wheat | cytosol | 97.39 | 97.39 |
| Zm00001d046482_P001 | Maize | cytosol | 78.43 | 77.67 |
| EER89986 | Sorghum | cytosol | 77.78 | 77.02 |
| Zm00001d036931_P001 | Maize | cytosol | 77.78 | 77.02 |
| TraesCS6D01G169800.1 | Wheat | cytosol | 72.22 | 72.46 |
| Bra031761.1-P | Field mustard | cytosol | 35.95 | 66.67 |
| KRH21567 | Soybean | cytosol | 65.36 | 65.79 |
| KRH10761 | Soybean | cytosol | 65.36 | 65.79 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 66.01 | 65.58 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 54.25 | 65.35 |
| GSMUA_Achr10P... | Banana | cytosol | 59.15 | 64.87 |
| CDY34656 | Canola | cytosol | 63.07 | 64.77 |
| CDY34843 | Canola | cytosol | 63.07 | 64.77 |
| Bra031759.1-P | Field mustard | cytosol | 62.75 | 64.43 |
| CDY20986 | Canola | cytosol | 62.75 | 64.43 |
| AT1G61290.2 | Thale cress | cytosol | 63.73 | 64.36 |
| KRH41917 | Soybean | cytosol | 63.73 | 64.14 |
| AT1G11250.1 | Thale cress | cytosol | 62.42 | 64.09 |
| CDY70107 | Canola | cytosol | 62.09 | 63.76 |
| Bra016846.1-P | Field mustard | cytosol | 62.09 | 63.76 |
| CDX97943 | Canola | cytosol | 62.09 | 63.76 |
| Bra019872.1-P | Field mustard | cytosol | 62.09 | 63.76 |
| PGSC0003DMT400035739 | Potato | cytosol | 64.38 | 63.55 |
| Solyc12g005580.1.1 | Tomato | cytosol | 64.38 | 63.55 |
| CDY19350 | Canola | cytosol | 61.76 | 63.42 |
| PGSC0003DMT400055777 | Potato | cytosol | 64.05 | 63.02 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 62.42 | 62.62 |
| CDY48554 | Canola | cytosol | 61.44 | 61.64 |
| Bra034202.1-P | Field mustard | cytosol | 61.44 | 61.64 |
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 20.91 | 61.54 |
| CDY21958 | Canola | cytosol | 61.11 | 61.31 |
| AT4G03330.1 | Thale cress | cytosol | 60.78 | 60.98 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 45.1 | 43.81 |
| TraesCS5D01G109500.1 | Wheat | cytosol | 42.48 | 42.48 |
| TraesCS2D01G248900.1 | Wheat | cytosol | 41.5 | 42.05 |
| TraesCS2D01G224100.1 | Wheat | cytosol | 41.5 | 41.91 |
| TraesCS4D01G066100.1 | Wheat | cytosol | 41.5 | 40.19 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 36.6 | 35.56 |
| TraesCS6D01G136400.1 | Wheat | cytosol | 26.47 | 26.47 |
| TraesCS2D01G219400.1 | Wheat | cytosol | 23.2 | 20.46 |
Protein Annotations
| Gene3D:1.20.58.70 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | InterPro:IPR000727 | PFAM:PF00804 | PFAM:PF05739 |
| ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF198 | SMART:SM00397 | SMART:SM00503 |
| InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| EnsemblPlantsGene:TraesCS7D01G354500 | EnsemblPlants:TraesCS7D01G354500.1 | TIGR:cd00179 | TIGR:cd15848 | SEG:seg | : |
Description
No Description!
Coordinates
chr7D:+:458520956..458521989
Molecular Weight (calculated)
34062.5 Da
IEP (calculated)
6.255
GRAVY (calculated)
-0.440
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSTNSF KKYADANPET SAADMEAGGM NGANLDQFFS DVEAVKEDLK GFETLHKRLQ STNEETKTAH DARTIKALRS RMDGDVEQVL KRAKAVKAKL
101: EVLKRDNANS RKAPDWGPGS SVDRTRTSVV AGLGKKLKDI MDDFQGLRAK MAAEYKETVA RRYFTVTGEH AEESTIDSLI SSGESESFLQ KAIQDQGRGQ
201: VMDTISEIQE RSDAVKDIER SLMDLHQVFL DMAALVEAQG HQINDIERHV AHASSFVRRG TVELEQAHEI QKDTRKWMCF AVLGGIALVV VLVTPVLINL
301: HILTLR
101: EVLKRDNANS RKAPDWGPGS SVDRTRTSVV AGLGKKLKDI MDDFQGLRAK MAAEYKETVA RRYFTVTGEH AEESTIDSLI SSGESESFLQ KAIQDQGRGQ
201: VMDTISEIQE RSDAVKDIER SLMDLHQVFL DMAALVEAQG HQINDIERHV AHASSFVRRG TVELEQAHEI QKDTRKWMCF AVLGGIALVV VLVTPVLINL
301: HILTLR
001: MNDLFSNSFK KNQAQLGDVE AGQETMNLDK FFEDVENVKD DMKGVEALYK KLQDSNEECK TVHNAKKVKE LRAKMDGDVA MVLKRVKIIK QKLEALEKAN
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK
Arabidopsis Description
SYP125Syntaxin-125 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXB0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.