Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89986 | Sorghum | cytosol | 97.41 | 97.41 |
| Zm00001d036931_P001 | Maize | cytosol | 96.44 | 96.44 |
| TraesCS7A01G368400.1 | Wheat | cytosol | 78.32 | 79.08 |
| TraesCS7B01G260100.1 | Wheat | cytosol | 77.99 | 78.76 |
| TraesCS7D01G354500.1 | Wheat | cytosol | 77.67 | 78.43 |
| GSMUA_Achr10P... | Banana | cytosol | 64.72 | 71.68 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 58.9 | 71.65 |
| Zm00001d053607_P001 | Maize | cytosol | 72.49 | 71.57 |
| KRH10761 | Soybean | cytosol | 70.23 | 71.38 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 70.87 | 71.1 |
| KRH21567 | Soybean | cytosol | 69.9 | 71.05 |
| Bra031761.1-P | Field mustard | cytosol | 37.86 | 70.91 |
| KRH41917 | Soybean | cytosol | 69.26 | 70.39 |
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 23.62 | 70.19 |
| AT1G61290.2 | Thale cress | cytosol | 67.96 | 69.31 |
| CDY20986 | Canola | cytosol | 66.02 | 68.46 |
| CDY34656 | Canola | cytosol | 66.02 | 68.46 |
| CDY34843 | Canola | cytosol | 66.02 | 68.46 |
| AT1G11250.1 | Thale cress | cytosol | 66.02 | 68.46 |
| Solyc12g005580.1.1 | Tomato | cytosol | 68.61 | 68.39 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 67.31 | 68.2 |
| Bra016846.1-P | Field mustard | cytosol | 65.7 | 68.12 |
| Bra019872.1-P | Field mustard | cytosol | 65.7 | 68.12 |
| Bra031759.1-P | Field mustard | cytosol | 65.7 | 68.12 |
| CDX97943 | Canola | cytosol | 65.7 | 68.12 |
| PGSC0003DMT400035739 | Potato | cytosol | 68.28 | 68.06 |
| CDY19350 | Canola | cytosol | 65.37 | 67.79 |
| CDY70107 | Canola | cytosol | 65.37 | 67.79 |
| PGSC0003DMT400055777 | Potato | cytosol | 67.31 | 66.88 |
| CDY48554 | Canola | cytosol | 62.46 | 63.28 |
| Bra034202.1-P | Field mustard | cytosol | 62.46 | 63.28 |
| CDY21958 | Canola | cytosol | 62.46 | 63.28 |
| AT4G03330.1 | Thale cress | cytosol | 61.16 | 61.97 |
| Zm00001d034365_P001 | Maize | plasma membrane | 54.37 | 54.9 |
| Zm00001d013323_P001 | Maize | cytosol | 47.57 | 46.82 |
| Zm00001d033919_P001 | Maize | plasma membrane | 46.93 | 46.33 |
| Zm00001d007902_P001 | Maize | mitochondrion, plasma membrane | 40.78 | 41.45 |
| Zm00001d041716_P002 | Maize | cytosol | 41.1 | 40.06 |
| Zm00001d013115_P001 | Maize | cytosol | 18.77 | 39.73 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 40.45 | 39.68 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 40.13 | 39.37 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 36.57 | 38.7 |
| Zm00001d021664_P001 | Maize | cytosol | 40.45 | 35.11 |
| Zm00001d018867_P002 | Maize | plastid | 42.07 | 33.25 |
| Zm00001d035331_P001 | Maize | cytosol | 25.89 | 26.85 |
Protein Annotations
| Gene3D:1.20.58.70 | EntrezGene:103638675 | MapMan:22.7.1.1 | ProteinID:AQL04376.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | InterPro:IPR000727 | UniProt:K7VES8 | PFAM:PF00804 |
| PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF198 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI000221C239 | EnsemblPlantsGene:Zm00001d046482 | EnsemblPlants:Zm00001d046482_P001 | EnsemblPlants:Zm00001d046482_T001 | SEG:seg |
Description
Syntaxin-123
Coordinates
chr9:+:91925246..91926580
Molecular Weight (calculated)
34079.5 Da
IEP (calculated)
6.013
GRAVY (calculated)
-0.447
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSSSSF KKYADSSPAT SAGGTEAGGG ESGVDLDKFF EDVEAVKEDM RGLEGMYKGL QSTNEETKTA HDARTVKSLR SRMDKDVEQV LRRAKAIKGK
101: LEDLDRSNAT SRQVPGCGPG SSTDRTRTSV VAGLGKKLKD LMDDFQGLRA RMAAEYKETV ARRYYTVTGE KPEDSTIEAL ISSGESESFL QKAIQEQGRG
201: QVMDTISEIQ ERHDAVKDIE RSLMDLHQVF LDMAALVEAQ GHQLNDIESH VAHASSFVRR GTVELESARE YQKSSRKWMC IAILASIVLI AVLVLPVLIN
301: LRILTLPTK
101: LEDLDRSNAT SRQVPGCGPG SSTDRTRTSV VAGLGKKLKD LMDDFQGLRA RMAAEYKETV ARRYYTVTGE KPEDSTIEAL ISSGESESFL QKAIQEQGRG
201: QVMDTISEIQ ERHDAVKDIE RSLMDLHQVF LDMAALVEAQ GHQLNDIESH VAHASSFVRR GTVELESARE YQKSSRKWMC IAILASIVLI AVLVLPVLIN
301: LRILTLPTK
001: MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
Arabidopsis Description
SYP124Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.