Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES06503 | Sorghum | cytosol | 87.54 | 86.98 |
| TraesCS6B01G211000.1 | Wheat | cytosol | 77.64 | 79.67 |
| TraesCS6D01G169800.1 | Wheat | cytosol | 77.32 | 79.34 |
| Os02t0209900-01 | Rice | cytosol | 77.64 | 78.14 |
| Zm00001d046482_P001 | Maize | cytosol | 71.57 | 72.49 |
| Zm00001d036931_P001 | Maize | cytosol | 71.57 | 72.49 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 55.91 | 68.9 |
| GSMUA_Achr10P... | Banana | cytosol | 60.7 | 68.1 |
| KRH21567 | Soybean | cytosol | 63.26 | 65.13 |
| KRH41917 | Soybean | cytosol | 62.62 | 64.47 |
| KRH10761 | Soybean | cytosol | 62.62 | 64.47 |
| AT1G61290.2 | Thale cress | cytosol | 62.3 | 64.36 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 63.26 | 64.29 |
| AT4G03330.1 | Thale cress | cytosol | 62.3 | 63.93 |
| TraesCS6A01G182200.1 | Wheat | cytosol | 77.0 | 63.76 |
| AT1G11250.1 | Thale cress | cytosol | 60.38 | 63.42 |
| CDY20986 | Canola | cytosol | 59.74 | 62.75 |
| CDY48554 | Canola | cytosol | 61.02 | 62.62 |
| Bra034202.1-P | Field mustard | cytosol | 61.02 | 62.62 |
| CDY21958 | Canola | cytosol | 61.02 | 62.62 |
| PGSC0003DMT400035739 | Potato | cytosol | 61.98 | 62.58 |
| CDY34656 | Canola | cytosol | 59.42 | 62.42 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 60.7 | 62.3 |
| CDY34843 | Canola | cytosol | 59.11 | 62.08 |
| Bra016846.1-P | Field mustard | cytosol | 59.11 | 62.08 |
| CDX97943 | Canola | cytosol | 59.11 | 62.08 |
| Bra019872.1-P | Field mustard | cytosol | 59.11 | 62.08 |
| CDY19350 | Canola | cytosol | 58.79 | 61.74 |
| Bra031759.1-P | Field mustard | cytosol | 58.79 | 61.74 |
| CDY70107 | Canola | cytosol | 58.79 | 61.74 |
| Solyc12g005580.1.1 | Tomato | cytosol | 61.02 | 61.61 |
| Bra031761.1-P | Field mustard | cytosol | 32.27 | 61.21 |
| PGSC0003DMT400055777 | Potato | cytosol | 60.7 | 61.09 |
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 19.81 | 59.62 |
| Zm00001d034365_P001 | Maize | plasma membrane | 54.95 | 56.21 |
| Zm00001d013323_P001 | Maize | cytosol | 47.6 | 47.45 |
| Zm00001d033919_P001 | Maize | plasma membrane | 46.96 | 46.96 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 42.17 | 41.9 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 38.98 | 41.78 |
| Zm00001d013115_P001 | Maize | cytosol | 19.17 | 41.1 |
| Zm00001d007902_P001 | Maize | mitochondrion, plasma membrane | 39.62 | 40.79 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 39.3 | 39.05 |
| Zm00001d041716_P002 | Maize | cytosol | 38.66 | 38.17 |
| Zm00001d021664_P001 | Maize | cytosol | 38.66 | 33.99 |
| Zm00001d018867_P002 | Maize | plastid | 39.3 | 31.46 |
| Zm00001d035331_P001 | Maize | cytosol | 26.52 | 27.85 |
Protein Annotations
| Gene3D:1.20.58.70 | EntrezGene:103654811 | MapMan:22.7.1.1 | UniProt:A0A1D6QQM6 | ProteinID:AQK59830.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | InterPro:IPR000727 | PFAM:PF00804 |
| PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF155 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI0004DE8552 | EnsemblPlantsGene:Zm00001d053607 | EnsemblPlants:Zm00001d053607_P001 | EnsemblPlants:Zm00001d053607_T001 | SEG:seg |
Description
Syntaxin-123
Coordinates
chr4:+:236206498..236207525
Molecular Weight (calculated)
34114.4 Da
IEP (calculated)
6.193
GRAVY (calculated)
-0.260
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSSASF KKYADLKQQV VLDDMEAGGG GGEAEGAGLD GFFEDVEGVK EDLRGMEALC RRLQSAHEES KTAHDARAVK ALRARMDADV DEVLRRAKAV
101: KDRLEALDRA SAASRKVAGC GPGSSTDRTR TSVVTGLGKK LKDLTDDFQS LRTRMAAEYR ETVARRYYTV TGEEAADSTV EALISSGQSE TFLRKAIQEQ
201: AAGRGQVLDT VSEIQERHGA VVEVERSLRE LHQVFLDVAA LVEAQGHQLN DIESHVARAS SFVLRGAVEL EAAREYQRSG RKWACVAVVA GAVLVVVIVL
301: PVLVNFHLLS LRR
101: KDRLEALDRA SAASRKVAGC GPGSSTDRTR TSVVTGLGKK LKDLTDDFQS LRTRMAAEYR ETVARRYYTV TGEEAADSTV EALISSGQSE TFLRKAIQEQ
201: AAGRGQVLDT VSEIQERHGA VVEVERSLRE LHQVFLDVAA LVEAQGHQLN DIESHVARAS SFVLRGAVEL EAAREYQRSG RKWACVAVVA GAVLVVVIVL
301: PVLVNFHLLS LRR
001: MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
Arabidopsis Description
SYP124Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.