Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d053607_P001 | Maize | cytosol | 86.98 | 87.54 |
| TraesCS6B01G211000.1 | Wheat | cytosol | 76.51 | 79.02 |
| TraesCS6D01G169800.1 | Wheat | cytosol | 76.19 | 78.69 |
| Os02t0209900-01 | Rice | cytosol | 75.87 | 76.85 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 58.73 | 72.83 |
| EER89986 | Sorghum | cytosol | 71.11 | 72.49 |
| GSMUA_Achr10P... | Banana | cytosol | 62.54 | 70.61 |
| KRH21567 | Soybean | cytosol | 64.13 | 66.45 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 64.76 | 66.23 |
| KRH41917 | Soybean | cytosol | 63.81 | 66.12 |
| KRH10761 | Soybean | cytosol | 63.81 | 66.12 |
| AT1G61290.2 | Thale cress | cytosol | 63.17 | 65.68 |
| PGSC0003DMT400035739 | Potato | cytosol | 63.49 | 64.52 |
| TraesCS6A01G182200.1 | Wheat | cytosol | 77.14 | 64.29 |
| AT4G03330.1 | Thale cress | cytosol | 62.22 | 64.26 |
| Bra031761.1-P | Field mustard | cytosol | 33.65 | 64.24 |
| Solyc12g005580.1.1 | Tomato | cytosol | 63.17 | 64.19 |
| CDY34656 | Canola | cytosol | 60.63 | 64.09 |
| AT1G11250.1 | Thale cress | cytosol | 60.32 | 63.76 |
| CDY34843 | Canola | cytosol | 60.32 | 63.76 |
| CDY20986 | Canola | cytosol | 60.32 | 63.76 |
| CDX97943 | Canola | cytosol | 60.0 | 63.42 |
| Bra019872.1-P | Field mustard | cytosol | 60.0 | 63.42 |
| Bra031759.1-P | Field mustard | cytosol | 60.0 | 63.42 |
| CDY21958 | Canola | cytosol | 61.27 | 63.28 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 61.27 | 63.28 |
| Bra034202.1-P | Field mustard | cytosol | 61.27 | 63.28 |
| CDY48554 | Canola | cytosol | 61.27 | 63.28 |
| Bra016846.1-P | Field mustard | cytosol | 59.68 | 63.09 |
| CDY19350 | Canola | cytosol | 59.68 | 63.09 |
| CDY70107 | Canola | cytosol | 59.37 | 62.75 |
| PGSC0003DMT400055777 | Potato | cytosol | 61.9 | 62.7 |
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 19.68 | 59.62 |
| EER93336 | Sorghum | cytosol | 53.33 | 54.72 |
| KXG37622 | Sorghum | cytosol | 49.52 | 50.0 |
| EER97312 | Sorghum | cytosol | 40.95 | 42.3 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 41.9 | 41.9 |
| EER98026 | Sorghum | cytosol | 39.37 | 40.92 |
| EES16084 | Sorghum | cytosol | 38.73 | 39.74 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 39.37 | 39.37 |
| OQU78880 | Sorghum | cytosol | 28.57 | 29.22 |
Protein Annotations
| Gene3D:1.20.58.70 | MapMan:22.7.1.1 | EntrezGene:8082946 | UniProt:C5XY01 | ncoils:Coil | EnsemblPlants:EES06503 |
| ProteinID:EES06503 | ProteinID:EES06503.1 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006887 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0012505 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 |
| GO:GO:0048278 | InterPro:IPR000727 | PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF155 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | EnsemblPlantsGene:SORBI_3004G088900 |
| SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0001A85CD4 |
| RefSeq:XP_002453527.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:7548556..7550015
Molecular Weight (calculated)
34522.1 Da
IEP (calculated)
6.729
GRAVY (calculated)
-0.275
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFTSASF KKYADLKHQV VMDDLESGVG GGEAEGPCLD RFFEDVEGVK EDLRGLESLH RRLQSAHEES KTAHDARAVK ALRARMDADV DQVLRRAKAV
101: KTKLEALDRA NAASRRLPGC GPGSSADRTR TSVVTGLGKK LKDLMDDFQG LRTRMAAEYK ETVARRYYTV TGEEAAEGTV EALIASGQSE TFLQKAIQEQ
201: AAAAGRAQVV DTVSEIQERR DAVVEVERSL RELHQVFLDM AALVEAQGHQ LNDIESHVAR ASSFVLRGAV ELEAAREYQR SGRKWACVAL VAAALLAAVV
301: VLPVLVNLHL LSLRR
101: KTKLEALDRA NAASRRLPGC GPGSSADRTR TSVVTGLGKK LKDLMDDFQG LRTRMAAEYK ETVARRYYTV TGEEAAEGTV EALIASGQSE TFLQKAIQEQ
201: AAAAGRAQVV DTVSEIQERR DAVVEVERSL RELHQVFLDM AALVEAQGHQ LNDIESHVAR ASSFVLRGAV ELEAAREYQR SGRKWACVAL VAAALLAAVV
301: VLPVLVNLHL LSLRR
001: MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
Arabidopsis Description
SYP124Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.