Factsheet for Bra034202.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000090.1-P
Bra001306.1-P
Bra002867.1-P
Bra005749.1-P
Bra006289.1-P
Bra008713.1-P
Bra008803.1-P
Bra009560.1-P
Bra010436.1-P
Bra010455.1-P
Bra010982.1-P
Bra011119.1-P
Bra011260.1-P
Bra012490.1-P
Bra012620.1-P
Bra013905.1-P
Bra014967.1-P
Bra017103.1-P
Bra019148.1-P
Bra021478.1-P
Bra021744.1-P
Bra022177.1-P
Bra022866.1-P
Bra023511.1-P
Bra024012.1-P
Bra024481.1-P
Bra024770.1-P
Bra026455.1-P
Bra028325.1-P
Bra029771.1-P
Bra030509.1-P
Bra030816.1-P
Bra032586.1-P
Bra032828.1-P
Bra033346.1-P
Bra034070.1-P
Bra034692.1-P
Bra034693.1-P
Bra035594.1-P
Bra036285.1-P
Bra037242.1-P
Bra039150.1-P
Bra039911.1-P
Bra040115.1-P
Bra040415.1-P
Bra040785.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03330.1	Bra022177.1-P	AT1G02780.1	24556609
AT4G03330.1	Bra030509.1-P	AT1G02780.1	24556609
AT4G03330.1	Bra032586.1-P	AT1G02780.1	24556609
AT4G03330.1	Bra033346.1-P	AT1G02780.1	24556609
AT4G03330.1	Bra036285.1-P	AT1G02780.1	24556609
AT4G03330.1	Bra010982.1-P	AT1G25260.1	24556609
AT4G03330.1	Bra012490.1-P	AT1G25260.1	24556609
AT4G03330.1	Bra024770.1-P	AT1G25260.1	24556609
AT4G03330.1	Bra032828.1-P	AT1G27400.1	24556609
AT4G03330.1	Bra030816.1-P	AT1G56110.1	24556609
AT4G03330.1	Bra040785.1-P	AT1G56110.1	24556609
AT4G03330.1	Bra024481.1-P	AT2G18020.1	24556609
AT4G03330.1	Bra037242.1-P	AT2G18020.1	24556609
AT4G03330.1	Bra039911.1-P	AT2G18020.1	24556609
AT4G03330.1	Bra021744.1-P	AT2G31800.1	24556609
AT4G03330.1	Bra022866.1-P	AT2G31800.1	24556609
AT4G03330.1	Bra000090.1-P	AT2G38750.1	24556609
AT4G03330.1	Bra017103.1-P	AT2G38750.1	24556609
AT4G03330.1	Bra021478.1-P	AT3G02080.1	24556609
AT4G03330.1	Bra039150.1-P	AT3G02080.1	24556609
AT4G03330.1	Bra040115.1-P	AT3G04920.1	24556609
AT4G03330.1	Bra040415.1-P	AT3G04920.1	24556609
AT4G03330.1	Bra001306.1-P	AT3G09500.1	24556609
AT4G03330.1	Bra029771.1-P	AT3G09500.1	24556609
AT4G03330.1	Bra034070.1-P	AT3G09500.1	24556609
AT4G03330.1	Bra034692.1-P	AT3G13300.1	24556609
AT4G03330.1	Bra034693.1-P	AT3G13300.1	24556609
AT4G03330.1	Bra014967.1-P	AT3G23620.1	24556609
AT4G03330.1	Bra028325.1-P	AT3G23620.1	24556609
AT4G03330.1	Bra012620.1-P	AT4G18060.1	24556609
AT4G03330.1	Bra010436.1-P	AT4G26230.1	24556609
AT4G03330.1	Bra026455.1-P	AT4G26230.1	24556609
AT4G03330.1	Bra011119.1-P	AT4G29520.1	24556609
AT4G03330.1	Bra011260.1-P	AT4G31340.1	24556609
AT4G03330.1	Bra024012.1-P	AT4G31340.1	24556609
AT4G03330.1	Bra005749.1-P	AT5G02870.1	24556609
AT4G03330.1	Bra009560.1-P	AT5G02870.1	24556609
AT4G03330.1	Bra008803.1-P	AT5G13780.1	24556609
AT4G03330.1	Bra006289.1-P	AT5G15200.1	24556609
AT4G03330.1	Bra008713.1-P	AT5G15200.1	24556609
AT4G03330.1	Bra023511.1-P	AT5G15200.1	24556609
AT4G03330.1	Bra010455.1-P	AT5G52470.1	24556609
AT4G03330.1	Bra013905.1-P	AT5G52470.1	24556609
AT4G03330.1	Bra019148.1-P	AT5G52470.1	24556609
AT4G03330.1	Bra002867.1-P	AT5G55920.1	24556609
AT4G03330.1	Bra035594.1-P	AT5G55920.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48554	Canola	cytosol	99.34	99.34
CDY21958	Canola	cytosol	99.34	99.34
AT4G03330.1	Thale cress	cytosol	92.46	92.46
Bra031761.1-P	Field mustard	cytosol	38.36	70.91
Bra031759.1-P	Field mustard	cytosol	67.21	68.79
Bra016846.1-P	Field mustard	cytosol	66.56	68.12
Bra019872.1-P	Field mustard	cytosol	66.23	67.79
Bra031760.1-P	Field mustard	cytosol, nucleus, plasma membrane	22.95	67.31
TraesCS6D01G169800.1	Wheat	cytosol	65.9	65.9
TraesCS6B01G211000.1	Wheat	cytosol	65.9	65.9
GSMUA_Achr10P...	Banana	cytosol	59.02	64.52
GSMUA_Achr6P04820_001	Banana	cytosol	53.11	63.78
TraesCS7B01G260100.1	Wheat	cytosol	63.61	63.4
Zm00001d036931_P001	Maize	cytosol	63.93	63.11
EER89986	Sorghum	cytosol	63.61	62.78
Zm00001d046482_P001	Maize	cytosol	63.28	62.46
TraesCS7A01G368400.1	Wheat	cytosol	62.62	62.42
TraesCS7D01G354500.1	Wheat	cytosol	61.64	61.44
Os02t0209900-01	Rice	cytosol	62.62	61.41
EES06503	Sorghum	cytosol	63.28	61.27
Zm00001d053607_P001	Maize	cytosol	62.62	61.02
TraesCS6A01G182200.1	Wheat	cytosol	65.9	53.17
Bra001422.1-P	Field mustard	cytosol	57.38	52.55
Bra034808.1-P	Field mustard	cytosol, nucleus, plastid	53.11	49.85
Bra005968.1-P	Field mustard	cytosol	48.85	49.01
Bra028672.1-P	Field mustard	cytosol	48.52	48.84
Bra009318.1-P	Field mustard	cytosol	48.52	48.84
Bra033436.1-P	Field mustard	cytosol	51.48	45.91
Bra012806.1-P	Field mustard	cytosol, nucleus, peroxisome	44.92	44.48
Bra018615.1-P	Field mustard	cytosol	43.61	43.32
Bra030733.1-P	Field mustard	cytosol	42.3	42.43
Bra031972.1-P	Field mustard	cytosol	38.36	41.79
Bra036431.1-P	Field mustard	cytosol	38.03	41.73
Bra039622.1-P	Field mustard	cytosol	34.43	36.46
Bra024476.1-P	Field mustard	cytosol	33.77	36.01
HORVU7Hr1G085550.1	Barley	cytosol	35.74	34.6
HORVU6Hr1G038490.4	Barley	nucleus	35.08	33.97

Protein Annotations

Gene3D:1.20.58.70	MapMan:22.7.1.1	EnsemblPlantsGene:Bra034202	EnsemblPlants:Bra034202.1	EnsemblPlants:Bra034202.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:IPR000727	UniProt:M4EZF9
PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF198
SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0002543BE0	SEG:seg	:	:

Description

AT4G03330 (E=8e-151) SYP123, ATSYP123 | SYP123 (SYNTAXIN OF PLANTS 123); SNAP receptor

Coordinates

chrA01:-:26962402..26963966

Molecular Weight (calculated)

34431.4 Da

IEP (calculated)

7.621

GRAVY (calculated)

-0.413

Length

305 amino acids

Sequence
(BLAST)

001: MNDLISSSFK RYTDLNHQVQ LDDIESQNAT LDSGNLDEFF GYVESVKEDM KAVDEIHKRL QDANEESKTV HDSKAVKKLR ARMDTSVTEV LKRVKMIKTK
101: LVALEKSNAA QRKVPGCGPG SSADRTRTSV VSGLGKKLKD MMDDFQRLRT KMASEYKETV ERRYFTVTGQ KADEETIEKL ISSGESERFL QKAIQEQGRG
201: QIMDTLSEIQ ERHDAVKDIE RSLLELHQIF LDMAALVEAQ GSILNDIESN VSKASSFVMR GSEQLQGAKV LQRNSRKWTC IAIILAIVLV IVILFPILYT
301: SLLKP

Best Arabidopsis Sequence Match ( AT4G03330.1 )
(BLAST)

001: MNDLISSSFK RYTDLNHQVQ LDDIESQNVS LDSGNLDEFF GYVESVKEDM KAVDEIHKRL QDANEESKTV HDSKAVKKLR ARMDSSVTEV LKRVKMIKTK
101: LVALEKSNAA QRKVAGCGPG SSADRTRTSV VSGLGKKLKD MMDDFQRLRT KMATEYKETV ERRYFTVTGQ KADEETVEKL ISSGESERFL QKAIQEQGRG
201: QVMDTLSEIQ ERHDTVKEIE RSLLELHQVF LDMAALVEAQ GNMLNDIESN VSKASSFVMR GTDQLHGAKV LQRNNRKWAC IATILAIVVV IVILFPILFN
301: TLLRP

Arabidopsis Description

SYP123SYP123 [Source:UniProtKB/TrEMBL;Acc:A0A178V4Y6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.