Factsheet for Bra034808.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000090.1-P
Bra000600.1-P
Bra000964.1-P
Bra001009.1-P
Bra001127.1-P
Bra001306.1-P
Bra001548.1-P
Bra002867.1-P
Bra002880.1-P
Bra005749.1-P
Bra006289.1-P
Bra008279.1-P
Bra008713.1-P
Bra009303.1-P
Bra009560.1-P
Bra009978.1-P
Bra009989.1-P
Bra010013.1-P
Bra010329.1-P
Bra010436.1-P
Bra010455.1-P
Bra010500.1-P
Bra010982.1-P
Bra011106.1-P
Bra011260.1-P
Bra011320.1-P
Bra011367.1-P	plasma membrane
Bra012490.1-P
Bra012620.1-P
Bra013774.1-P
Bra013905.1-P
Bra014333.1-P
Bra014967.1-P
Bra015345.1-P
Bra017103.1-P
Bra017204.1-P
Bra019148.1-P
Bra019993.1-P
Bra020601.1-P
Bra021744.1-P
Bra022866.1-P
Bra023104.1-P
Bra023227.1-P
Bra023511.1-P
Bra023964.1-P
Bra024012.1-P
Bra024145.1-P
Bra024215.1-P
Bra024481.1-P
Bra024770.1-P
Bra025862.1-P
Bra026272.1-P
Bra026324.1-P
Bra026455.1-P
Bra027160.1-P
Bra027174.1-P
Bra028325.1-P
Bra029771.1-P
Bra029785.1-P
Bra030588.1-P
Bra030798.1-P
Bra030816.1-P
Bra031096.1-P
Bra032493.1-P
Bra032828.1-P
Bra033205.1-P
Bra034070.1-P
Bra034085.1-P
Bra035518.1-P
Bra035582.1-P
Bra035594.1-P
Bra036111.1-P
Bra036117.1-P
Bra036125.1-P
Bra037049.1-P	plasma membrane
Bra037242.1-P
Bra038695.1-P
Bra039130.1-P
Bra039911.1-P
Bra040115.1-P
Bra040119.1-P
Bra040409.1-P
Bra040415.1-P
Bra040785.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11820.1	Bra015345.1-P	AT1G04750.1	24556609
AT3G11820.1	Bra030588.1-P	AT1G04750.1	24556609
AT3G11820.1	Bra032493.1-P	AT1G04750.1	24556609
AT3G11820.1	Bra019993.1-P	AT1G09770.1	24556609
AT3G11820.1	Bra027160.1-P	AT1G09770.1	24556609
AT3G11820.1	Bra030798.1-P	AT1G09770.1	24556609
AT3G11820.1	Bra025862.1-P	AT1G20970.1	24556609
AT3G11820.1	Bra010982.1-P	AT1G25260.1	24556609
AT3G11820.1	Bra012490.1-P	AT1G25260.1	24556609
AT3G11820.1	Bra024770.1-P	AT1G25260.1	24556609
AT3G11820.1	Bra032828.1-P	AT1G27400.1	24556609
AT3G11820.1	Bra023227.1-P	AT1G31970.1	24556609
AT3G11820.1	Bra035518.1-P	AT1G31970.1	24556609
AT3G11820.1	Bra030816.1-P	AT1G56110.1	24556609
AT3G11820.1	Bra040785.1-P	AT1G56110.1	24556609
AT3G11820.1	Bra008279.1-P	AT1G76810.1	24556609
AT3G11820.1	Bra024481.1-P	AT2G18020.1	24556609
AT3G11820.1	Bra037242.1-P	AT2G18020.1	24556609
AT3G11820.1	Bra039911.1-P	AT2G18020.1	24556609
AT3G11820.1	Bra031096.1-P	AT2G19750.1	24556609
AT3G11820.1	Bra021744.1-P	AT2G31800.1	24556609
AT3G11820.1	Bra022866.1-P	AT2G31800.1	24556609
AT3G11820.1	Bra017204.1-P	AT2G37190.1	24556609
AT3G11820.1	Bra023104.1-P	AT2G37190.1	24556609
AT3G11820.1	Bra000090.1-P	AT2G38750.1	24556609
AT3G11820.1	Bra017103.1-P	AT2G38750.1	24556609
AT3G11820.1	Bra001009.1-P	AT3G01290.1	24556609
AT3G11820.1	Bra039130.1-P	AT3G01290.1	24556609
AT3G11820.1	Bra010013.1-P	AT3G04470.1	24556609
AT3G11820.1	Bra036125.1-P	AT3G04470.1	24556609
AT3G11820.1	Bra001127.1-P	AT3G04840.1	24556609
AT3G11820.1	Bra026324.1-P	AT3G04840.1	24556609
AT3G11820.1	Bra040119.1-P	AT3G04840.1	24556609
AT3G11820.1	Bra040409.1-P	AT3G04840.1	24556609
AT3G11820.1	Bra040115.1-P	AT3G04920.1	24556609
AT3G11820.1	Bra040415.1-P	AT3G04920.1	24556609
AT3G11820.1	Bra001306.1-P	AT3G09500.1	24556609
AT3G11820.1	Bra029771.1-P	AT3G09500.1	24556609
AT3G11820.1	Bra034070.1-P	AT3G09500.1	24556609
AT3G11820.1	Bra014333.1-P	AT3G09740.1	24556609
AT3G11820.1	Bra029785.1-P	AT3G09740.1	24556609
AT3G11820.1	Bra034085.1-P	AT3G09740.1	24556609
AT3G11820.1	Bra038695.1-P	AT3G12030.1	24556609
AT3G11820.1	Bra027174.1-P	AT3G16310.1	21798944
AT3G11820.1	Bra014967.1-P	AT3G23620.1	24556609
AT3G11820.1	Bra028325.1-P	AT3G23620.1	24556609
AT3G11820.1	Bra000964.1-P	AT4G00670.1	24556609
AT3G11820.1	Bra012620.1-P	AT4G18060.1	24556609
AT3G11820.1	Bra010500.1-P	AT4G24190.1	24556609
AT3G11820.1	Bra013774.1-P	AT4G24190.1	24556609
AT3G11820.1	Bra010436.1-P	AT4G26230.1	24556609
AT3G11820.1	Bra026455.1-P	AT4G26230.1	24556609
AT3G11820.1	Bra024215.1-P	AT4G28250.1	24556609
AT3G11820.1	Bra026272.1-P	AT4G28250.1	24556609
AT3G11820.1	Bra001548.1-P	AT4G29410.1	24556609
AT3G11820.1	Bra010329.1-P	AT4G29410.1	24556609
AT3G11820.1	Bra011106.1-P	AT4G29410.1	24556609
AT3G11820.1	Bra024145.1-P	AT4G29410.1	24556609
AT3G11820.1	Bra033205.1-P	AT4G29410.1	24556609
AT3G11820.1	Bra011260.1-P	AT4G31340.1	24556609
AT3G11820.1	Bra024012.1-P	AT4G31340.1	24556609
AT3G11820.1	Bra011320.1-P	AT4G32070.1	24556609
AT3G11820.1	Bra023964.1-P	AT4G32070.1	24556609
AT3G11820.1	Bra011367.1-P	AT4G32650.1	20735773
AT3G11820.1	Bra037049.1-P	AT4G32650.1	20735773
AT3G11820.1	Bra005749.1-P	AT5G02870.1	24556609
AT3G11820.1	Bra009560.1-P	AT5G02870.1	24556609
AT3G11820.1	Bra009303.1-P	AT5G06970.1	24556609
AT3G11820.1	Bra006289.1-P	AT5G15200.1	24556609
AT3G11820.1	Bra008713.1-P	AT5G15200.1	24556609
AT3G11820.1	Bra023511.1-P	AT5G15200.1	24556609
AT3G11820.1	Bra009978.1-P	AT5G27120.1	24556609
AT3G11820.1	Bra020601.1-P	AT5G27120.1	24556609
AT3G11820.1	Bra036111.1-P	AT5G27120.1	24556609
AT3G11820.1	Bra009989.1-P	AT5G28060.1	24556609
AT3G11820.1	Bra036117.1-P	AT5G28060.1	24556609
AT3G11820.1	Bra000600.1-P	AT5G49930.1	24556609
AT3G11820.1	Bra010455.1-P	AT5G52470.1	24556609
AT3G11820.1	Bra013905.1-P	AT5G52470.1	24556609
AT3G11820.1	Bra019148.1-P	AT5G52470.1	24556609
AT3G11820.1	Bra002880.1-P	AT5G55660.1	24556609
AT3G11820.1	Bra035582.1-P	AT5G55660.1	24556609
AT3G11820.1	Bra002867.1-P	AT5G55920.1	24556609
AT3G11820.1	Bra035594.1-P	AT5G55920.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08492	Canola	cytosol	99.38	95.28
Bra001422.1-P	Field mustard	cytosol	89.23	87.09
AT3G11820.1	Thale cress	cytosol, nucleus, plastid	89.54	84.1
KRH32861	Soybean	mitochondrion	70.46	68.98
PGSC0003DMT400072325	Potato	cytosol	63.08	67.88
Solyc01g006950.2.1	Tomato	nucleus	62.46	67.67
Solyc10g081850.1.1	Tomato	cytosol	63.08	67.66
KRH72169	Soybean	cytosol	69.23	67.16
PGSC0003DMT400054965	Potato	cytosol	61.54	66.67
VIT_08s0032g01150.t01	Wine grape	cytosol	65.54	65.74
Bra033436.1-P	Field mustard	cytosol	66.15	62.87
Bra012806.1-P	Field mustard	cytosol, nucleus, peroxisome	59.38	62.66
GSMUA_Achr6P31140_001	Banana	cytosol	52.62	62.41
Bra031760.1-P	Field mustard	cytosol, nucleus, plasma membrane	19.69	61.54
Bra031759.1-P	Field mustard	cytosol	52.31	57.05
Bra031761.1-P	Field mustard	cytosol	28.92	56.97
Bra019872.1-P	Field mustard	cytosol	51.38	56.04
Bra016846.1-P	Field mustard	cytosol	51.38	56.04
EER93336	Sorghum	cytosol	52.62	55.7
Os03t0787000-01	Rice	plasma membrane	56.31	55.45
Zm00001d034365_P001	Maize	plasma membrane	52.0	55.23
GSMUA_Achr8P03020_001	Banana	cytosol	51.69	54.02
TraesCS5A01G425600.1	Wheat	cytosol, nucleus, plastid	52.31	53.63
TraesCS5B01G427600.1	Wheat	cytosol, golgi, nucleus	52.31	53.12
Bra034202.1-P	Field mustard	cytosol	49.85	53.11
TraesCSU01G076400.1	Wheat	cytosol, golgi, nucleus	52.31	52.96
HORVU5Hr1G103590.1	Barley	cytosol, mitochondrion	38.15	48.63
Bra009318.1-P	Field mustard	cytosol	44.62	47.85
Bra028672.1-P	Field mustard	cytosol	44.31	47.52
Bra005968.1-P	Field mustard	cytosol	44.31	47.37
Zm00001d013115_P001	Maize	cytosol	19.08	42.47
Bra018615.1-P	Field mustard	cytosol	39.08	41.37
Bra031972.1-P	Field mustard	cytosol	35.38	41.07
Bra030733.1-P	Field mustard	cytosol	38.15	40.79
Zm00001d013114_P001	Maize	cytosol, plastid	36.62	40.75
Bra036431.1-P	Field mustard	cytosol	34.77	40.65
Bra039622.1-P	Field mustard	cytosol	31.69	35.76
Bra024476.1-P	Field mustard	cytosol	30.77	34.97
HORVU5Hr1G103620.1	Barley	cytosol	14.46	30.32

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.1	EnsemblPlantsGene:Bra034808	EnsemblPlants:Bra034808.1	EnsemblPlants:Bra034808.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:IPR000727
UniProt:M4F162	PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF69	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS
InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0002547559	SEG:seg	:

Description

AT3G11820 (E=5e-080) SYP121, AT-SYR1, ATSYP121, SYR1, ATSYR1, PEN1 | SYP121 (SYNTAXIN OF PLANTS 121); SNAP receptor/ protein anchor

Coordinates

chrA05:+:21515512..21516798

Molecular Weight (calculated)

35840.7 Da

IEP (calculated)

9.378

GRAVY (calculated)

-0.548

Length

325 amino acids

Sequence
(BLAST)

001: MNDLFSSSFT RFRSSGEPSP QGTGVQMAHP AGVNLDKFFE DVESVKEELK ELDRVNDTLQ SSHEQSKTLP NAQAVKDLRS KMDGDVGVAL KKAKMIKVKL
101: EALDRSNAAN RSLPGCGPGS SSDRTRTSLL NGLRKKLKDS MDSFNRLREV ISSEYRETVQ RRYFTVTGEN PDEKTLDRLI STEQGRGRVL DTINEIQERH
201: DAVKDIEKNL RELHQVFLDM AVLVEHQGAQ LDDIESHVGR ASSFIRGGTE ELHTARVYQK NTRKWTCYAI IILIIIIVVV VLAVVKPWQT NGSGGGGGGG
301: GGGSPPAQGQ VPPPSPPQAR RLLLR

Best Arabidopsis Sequence Match ( AT3G11820.1 )
(BLAST)

001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR

Arabidopsis Description

SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.