Factsheet for Bra036125.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57011	Canola	nucleus, plastid	97.08	85.55
Bra010013.1-P	Field mustard	nucleus	81.49	77.47
KRG97041	Soybean	cytoskeleton, cytosol, nucleus	34.25	73.01
AT3G04470.1	Thale cress	nucleus	74.19	71.41
VIT_14s0036g01030.t01	Wine grape	nucleus	71.27	66.52
EES05988	Sorghum	nucleus	67.86	66.24
Zm00001d051948_P001	Maize	cytosol	67.37	65.66
GSMUA_Achr10P...	Banana	nucleus	65.26	65.47
KRG92643	Soybean	cytosol	68.51	65.43
Os02t0810100-00	Rice	plasma membrane	67.21	65.4
Zm00001d018443_P001	Maize	mitochondrion	66.72	65.13
TraesCS6D01G363800.1	Wheat	nucleus	66.56	65.08
TraesCS6B01G417700.1	Wheat	nucleus	66.4	64.92
TraesCS6A01G379500.1	Wheat	nucleus	66.4	64.92
GSMUA_Achr11P...	Banana	nucleus	67.05	64.43
PGSC0003DMT400060183	Potato	nucleus	68.67	64.29
Solyc05g054970.2.1	Tomato	extracellular, nucleus	68.67	64.29
KRH68787	Soybean	nucleus	69.97	62.55
PGSC0003DMT400025371	Potato	cytosol	59.9	60.79
KRH34141	Soybean	plastid	69.48	59.03
Solyc06g036620.1.1	Tomato	cytosol, nucleus, plastid	54.71	53.75
HORVU6Hr1G089010.1	Barley	nucleus	64.77	52.43
Bra015348.1-P	Field mustard	cytosol	54.38	51.22
Solyc06g036630.1.1	Tomato	endoplasmic reticulum	12.18	49.34
KRG97040	Soybean	nucleus	24.35	48.7
PGSC0003DMT400025373	Potato	nucleus	10.55	48.15
Bra034461.1-P	Field mustard	cytosol	43.34	45.25
Bra019833.1-P	Field mustard	cytosol	40.42	43.68
Bra016817.1-P	Field mustard	cytosol	35.39	42.41
Bra015003.1-P	Field mustard	cytosol, plastid	49.35	27.24

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.2	InterPro:ANKRD13	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlantsGene:Bra036125	EnsemblPlants:Bra036125.1	EnsemblPlants:Bra036125.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M4F4X1	PFAM:PF11904	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR12447	PANTHER:PTHR12447:SF17	SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI0002541F3C
SEG:seg	:	:	:	:	:

Description

AT3G04470 (E=1e-186) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G04780.1); Has 842 Blast hits to 642 proteins in 95 species: Archae - 0; Bacteria - 6; Metazoa - 523; Fungi - 26; Plants - 165; Viruses - 4; Other Eukaryotes - 118 (source: NCBI BLink).

Coordinates

chrA09:+:2603192..2605114

Molecular Weight (calculated)

68714.1 Da

IEP (calculated)

8.077

GRAVY (calculated)

-0.645

Length

616 amino acids

Sequence
(BLAST)

001: MEDYSKYTHS PAHLAVVLHD HTALRRIITN LPTLSKAGEV TNEAESLQAE SNADSITAVI DRRDVPNRET PLHLAVRLRD PVCAEILMSA GADWSLQNEN
101: GWSALQEAVC TREEAIAMII ARHYQPLAWA KWCRRLPRIT ASASRIRDFY MEITFHFESS VIPFVGRIAP SDTYRIWKRG CNLRADMTLA GFDGFRIQRS
201: DQTFLFLGDG YSSDDGKVSL PPRALIVLSH KEKEVTNALE GAGAQPTEAE VANEVKQMSQ TNMYRPGIDV TQAELVPQAN WRRQERTESV GSWKAKVYDM
301: MHVMVSVKSR SVPGAVSDEE MFAVDGVGAN GGENDGFEDV LTSEERKQLD SALLMEVDEE NDHHQENGGS LKEKKGWFGW NKKGSKPGCD GGSEDNTATK
401: VKKGSKLASE KGKSQRCDDT TKDNKGNAKK KKSESEYKKG LRPVLWLTPD FPLKTDELLP LLDILANKVK AVRRLRELLT TKLPTGTFPV KIAIPIIPTV
501: RVLVTFTKFE ELQPSEEFST PPSSPVFHDA KSSDNSSWVS WMKGARGGGQ ASDCESNRYR DDEVDPFLIP SDYTWVDSAE KKRRMKAKKA RIRKNRKHGA
601: PKPGSSSSRS NQEADA

Best Arabidopsis Sequence Match ( AT3G04470.1 )
(BLAST)

001: MEDYSKYTHS PAHLAVVLRD HAALRRIVSD LPRLAKAGEV TTEAESMESE SRADSVSAVI DRRDVPGRET PLHLAVRLRD PVSAEILMSA GADWSLQNEN
101: GWSALQEAVC TREEAIAMII ARHYQPLAWA KWCRRLPRII ASASRIRDFY MEITFHFESS VIPFIGRIAP SDTYRIWKRG SNLRADMTLA GFDGFKIQRS
201: DQTFLFLGDG YSSEDGKMSL SPGSLIVLSH KEKEMTNALE GAGAQPTDAE VAHEVALMSQ TNMYRPGIDV TQAELVSHLN WRRQERTEMV GNWKAKVYDM
301: LHVMVSVKSR RVPGAMTDEE LFAVDEERTA VTNGAETDGF EDVLTPEERL QLNSALQTGN SDAIEDEECE VTDQQENGAL KDKKGWFGWN KKGSNTEDTK
401: LKKGSKSAPE DGNQKGKSQK SSMVSDHANE DHGDAKKGKE KKKKKKGVAG DEVKRESEYK KGLRPVLWLT PDFPLTTDEL LPLLDILANK VKAVRRLREL
501: LTTKLPLGTF PVKLAIPIIP TVRVVVTFTK FEELQAAEEE FSTPPSSPVF HDAKSSSSEN SSPSWISWMR SGKSSDNDSN RYKDEADPFL IPSDYKWIDS
601: AEKKRRMKAK KAKSRRKKQA ATKAAGASDS GTRSNHVAEE

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9M840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.