CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051948_P001	Maize	cytosol	95.4	95.25
Zm00001d018443_P001	Maize	mitochondrion	94.93	94.93
Os02t0810100-00	Rice	plasma membrane	91.13	90.84
TraesCS6D01G363800.1	Wheat	nucleus	88.11	88.25
TraesCS6B01G417700.1	Wheat	nucleus	88.11	88.25
TraesCS6A01G379500.1	Wheat	nucleus	87.96	88.1
KRG97041	Soybean	cytoskeleton, cytosol, nucleus	34.07	74.39
GSMUA_Achr10P...	Banana	nucleus	69.57	71.5
GSMUA_Achr11P...	Banana	nucleus	72.27	71.14
HORVU6Hr1G089010.1	Barley	nucleus	85.1	70.56
CDX86213	Canola	nucleus	68.3	68.85
CDY48669	Canola	nucleus	67.83	68.48
VIT_14s0036g01030.t01	Wine grape	nucleus	71.47	68.33
KRG92643	Soybean	cytosol	69.41	67.91
Bra036125.1-P	Field mustard	nucleus	66.24	67.86
AT3G04470.1	Thale cress	nucleus	67.51	66.56
Solyc05g054970.2.1	Tomato	extracellular, nucleus	67.99	65.2
PGSC0003DMT400060183	Potato	nucleus	67.99	65.2
KRH68787	Soybean	nucleus	71.16	65.17
Bra010013.1-P	Field mustard	nucleus	66.88	65.12
PGSC0003DMT400025371	Potato	cytosol	57.84	60.13
KRH34141	Soybean	plastid	68.94	60.0
CDY57011	Canola	nucleus, plastid	65.93	59.51
CDY00019	Canola	mitochondrion	66.09	59.4
EER98424	Sorghum	cytosol	56.58	54.84
PGSC0003DMT400025373	Potato	nucleus	11.57	54.07
Solyc06g036620.1.1	Tomato	cytosol, nucleus, plastid	53.72	54.07
Solyc06g036630.1.1	Tomato	endoplasmic reticulum	13.0	53.95
KRG97040	Soybean	nucleus	23.93	49.03
EER99440	Sorghum	plastid	36.77	37.72

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.2	EntrezGene:8084687	InterPro:ANKRD13	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	UniProt:C5XV80	EnsemblPlants:EES05988	ProteinID:EES05988	ProteinID:EES05988.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005886	GO:GO:0016020	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF11904
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR12447	PANTHER:PTHR12447:SF17	SMART:SM00248	EnsemblPlantsGene:SORBI_3004G339600
SUPFAM:SSF48403	UniParc:UPI0001A85BE3	RefSeq:XP_002453012.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:67143061..67147706

Molecular Weight (calculated)

70056.9 Da

IEP (calculated)

7.309

GRAVY (calculated)

-0.644

Length

631 amino acids

Sequence
(BLAST)

001: MDDVSKYSHS PAHLAVLRRD HAALRRLVAA LPRLPRAGEV ATEEESIAGE AVADAVSAVI DRRDVPRRET PLHLAVRLRD PVAADILMSA GADWSLQNAD
101: GWSALQEAVC TREEAIATII ARHYQPLAWA KWCRRLPRIL ASISRIRDFY MEISFHFESS VIPFIGRIAP SDTYRIWKRG AALRADMTLA GFDGFRIQRS
201: DQTFLFLGDG ARPEDAGGKE LHPGSLIVLA HKDKEITDAL EGAGVQPTES EVAHEVALMS KTNMYRPGID VTQAELVPHL NWRRQERTES VGHWKAKVYD
301: MQNVLVTVKS RRVPGAMTDE ELFAMDGEEK NGRGAELDAE LDEVLTAEER KQLDSALRMG NNEEEAEERG DQGEAGADHM DANGVAKDKK GWFGWGGKKG
401: AKGDDKPPKV GSKDETSDPG KQKEKGSGKK KKGGSSAESL KHESEYKKGL RPVLWLTPDF PLKTDELIPL LDVLANKVKA VRRLRELLTT KLPTGTFPVK
501: IAIPIVPTIR VIVTFTKFEE LQPLDEFATP PSSPTQFQDA KAKESEGSGS WYSWVKGGRG TQSSDSGDSR NWKDEIDPFH IPSDYTWVDA TEKKRRMKAK
601: KAKSRRGTAR KQSSKNTSEG GHHPMMDGFE E

Best Arabidopsis Sequence Match ( AT3G04470.1 )
(BLAST)

001: MEDYSKYTHS PAHLAVVLRD HAALRRIVSD LPRLAKAGEV TTEAESMESE SRADSVSAVI DRRDVPGRET PLHLAVRLRD PVSAEILMSA GADWSLQNEN
101: GWSALQEAVC TREEAIAMII ARHYQPLAWA KWCRRLPRII ASASRIRDFY MEITFHFESS VIPFIGRIAP SDTYRIWKRG SNLRADMTLA GFDGFKIQRS
201: DQTFLFLGDG YSSEDGKMSL SPGSLIVLSH KEKEMTNALE GAGAQPTDAE VAHEVALMSQ TNMYRPGIDV TQAELVSHLN WRRQERTEMV GNWKAKVYDM
301: LHVMVSVKSR RVPGAMTDEE LFAVDEERTA VTNGAETDGF EDVLTPEERL QLNSALQTGN SDAIEDEECE VTDQQENGAL KDKKGWFGWN KKGSNTEDTK
401: LKKGSKSAPE DGNQKGKSQK SSMVSDHANE DHGDAKKGKE KKKKKKGVAG DEVKRESEYK KGLRPVLWLT PDFPLTTDEL LPLLDILANK VKAVRRLREL
501: LTTKLPLGTF PVKLAIPIIP TVRVVVTFTK FEELQAAEEE FSTPPSSPVF HDAKSSSSEN SSPSWISWMR SGKSSDNDSN RYKDEADPFL IPSDYKWIDS
601: AEKKRRMKAK KAKSRRKKQA ATKAAGASDS GTRSNHVAEE

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9M840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.