CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48669	Canola	nucleus	89.62	89.76
Bra010013.1-P	Field mustard	nucleus	90.73	87.65
KRG97041	Soybean	cytoskeleton, cytosol, nucleus	35.3	76.47
AT3G04470.1	Thale cress	nucleus	76.68	75.0
CDY57011	Canola	nucleus, plastid	80.83	72.39
CDY00019	Canola	mitochondrion	80.51	71.79
KRG92643	Soybean	cytosol	71.73	69.61
VIT_14s0036g01030.t01	Wine grape	nucleus	72.84	69.09
TraesCS6D01G363800.1	Wheat	nucleus	69.01	68.57
TraesCS6A01G379500.1	Wheat	nucleus	68.85	68.41
Zm00001d051948_P001	Maize	cytosol	69.01	68.35
EES05988	Sorghum	nucleus	68.85	68.3
TraesCS6B01G417700.1	Wheat	nucleus	68.69	68.25
PGSC0003DMT400060183	Potato	nucleus	71.25	67.78
Zm00001d018443_P001	Maize	mitochondrion	68.21	67.67
Os02t0810100-00	Rice	plasma membrane	68.37	67.61
Solyc05g054970.2.1	Tomato	extracellular, nucleus	70.93	67.48
GSMUA_Achr10P...	Banana	nucleus	65.97	67.26
GSMUA_Achr11P...	Banana	nucleus	68.85	67.24
KRH68787	Soybean	nucleus	72.36	65.75
PGSC0003DMT400025371	Potato	cytosol	62.94	64.91
KRH34141	Soybean	plastid	72.36	62.48
Solyc06g036620.1.1	Tomato	cytosol, nucleus, plastid	57.67	57.58
HORVU6Hr1G089010.1	Barley	nucleus	67.41	55.45
CDX89790	Canola	cytosol	54.47	53.79
CDY18256	Canola	cytosol	54.47	52.95
CDX85149	Canola	nucleus, plastid	49.52	52.45
KRG97040	Soybean	nucleus	24.44	49.68
Solyc06g036630.1.1	Tomato	endoplasmic reticulum	11.98	49.34
CDY45348	Canola	cytosol	45.21	48.96
PGSC0003DMT400025373	Potato	nucleus	9.9	45.93
CDY31210	Canola	nucleus	36.58	44.12
CDY07249	Canola	cytosol, plastid	40.1	44.11
CDY24874	Canola	cytosol	41.05	43.56
CDY21008	Canola	cytosol	35.62	43.39
CDX97982	Canola	cytosol, nucleus, peroxisome	40.73	39.91
CDX77466	Canola	plastid	48.88	28.52
CDY49802	Canola	endoplasmic reticulum, peroxisome, plasma membrane	38.98	25.21

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.2	InterPro:ANKRD13	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlants:CDX86213	ProteinID:CDX86213	ProteinID:CDX86213.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00144300001	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF11904	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR12447	PANTHER:PTHR12447:SF17	SUPFAM:SSF48403	UniParc:UPI0004EE32DA	SEG:seg

Description

BnaA06g29300D

Coordinates

chrLK031845:+:386882..389574

Molecular Weight (calculated)

69813.2 Da

IEP (calculated)

7.214

GRAVY (calculated)

-0.703

Length

626 amino acids

Sequence
(BLAST)

001: MEDYSKYTHS PAHLAVVLHD HAALRRIVMD LPSLAKAGEV TNEAESLEAE SRADAVTAVI DRRDVPGRET PLHLAVRMRD PVSAEILMSA GADWSLQNEN
101: GWSALQEAVC TREEAIAMII ARHYQPLAWA KWCRRLPRIT ASASRIRDFY MEITFHFESS VIPFISRIAP SDTYRIWKRG SNLRADMTLA GFDGFRIQRS
201: DQTFLFLGEG YASDDGKVLL PPGSLIVLSH KEKEVTNALE GAGTQPTEAE VAHEVAHMSQ TNMYRPGIDV TQADLVPQSN WRRQERTETV GSWKAKVYDM
301: MHVMVSVKSR RVPGAMTDEE LFAVDEDRTA NGAENDGFED VLTAEERKQL DSALRMGNSE AAEDEENDVD DHGSGGEANG APLKEKKGWF GWNKKGAKPE
401: EKEKEKGKSQ RSSTLSDNNS KEDAGDGKKG KDKGGAKKKK NESEYKKGLR PVLWLTPDFP LKTEELLPLL DILANKVKAV RRLRELLTTK LPTGTFPVKI
501: AIPIIPTVRV LITFTKFEEL QPSEEFSTPP TSPVFHDAKS SDSSSSASWV SWMKGTRGGG QSSDGDSNRY KDSEVDPFMI PSDYKWVDSA EKKRRMKAKK
601: ARIRKNRKQG ASKPSSSSSR SNQEPE

Best Arabidopsis Sequence Match ( AT3G04470.1 )
(BLAST)

001: MEDYSKYTHS PAHLAVVLRD HAALRRIVSD LPRLAKAGEV TTEAESMESE SRADSVSAVI DRRDVPGRET PLHLAVRLRD PVSAEILMSA GADWSLQNEN
101: GWSALQEAVC TREEAIAMII ARHYQPLAWA KWCRRLPRII ASASRIRDFY MEITFHFESS VIPFIGRIAP SDTYRIWKRG SNLRADMTLA GFDGFKIQRS
201: DQTFLFLGDG YSSEDGKMSL SPGSLIVLSH KEKEMTNALE GAGAQPTDAE VAHEVALMSQ TNMYRPGIDV TQAELVSHLN WRRQERTEMV GNWKAKVYDM
301: LHVMVSVKSR RVPGAMTDEE LFAVDEERTA VTNGAETDGF EDVLTPEERL QLNSALQTGN SDAIEDEECE VTDQQENGAL KDKKGWFGWN KKGSNTEDTK
401: LKKGSKSAPE DGNQKGKSQK SSMVSDHANE DHGDAKKGKE KKKKKKGVAG DEVKRESEYK KGLRPVLWLT PDFPLTTDEL LPLLDILANK VKAVRRLREL
501: LTTKLPLGTF PVKLAIPIIP TVRVVVTFTK FEELQAAEEE FSTPPSSPVF HDAKSSSSEN SSPSWISWMR SGKSSDNDSN RYKDEADPFL IPSDYKWIDS
601: AEKKRRMKAK KAKSRRKKQA ATKAAGASDS GTRSNHVAEE

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9M840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.