CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85149	Canola	nucleus, plastid	78.89	77.16
AT3G24210.1	Thale cress	nucleus	75.61	71.99
GSMUA_Achr5P13140_001	Banana	mitochondrion	52.94	57.84
HORVU2Hr1G052030.1	Barley	cytosol	10.03	57.43
VIT_05s0136g00240.t01	Wine grape	cytosol	61.76	54.75
CDX89790	Canola	cytosol	60.03	54.73
CDY18256	Canola	cytosol	60.9	54.66
GSMUA_Achr4P26640_001	Banana	cytosol	56.4	54.24
GSMUA_Achr1P01140_001	Banana	cytosol	50.87	53.75
EER98424	Sorghum	cytosol	59.17	52.53
Solyc09g091560.2.1	Tomato	cytosol	59.0	52.3
Zm00001d019522_P001	Maize	cytosol	59.0	52.14
PGSC0003DMT400076190	Potato	cytosol	58.65	51.99
Zm00001d005442_P001	Maize	cytosol	59.0	51.9
Os07t0436100-01	Rice	cytosol	58.13	51.22
TraesCS2A01G237500.1	Wheat	cytosol	57.44	50.69
TraesCS2D01G236000.1	Wheat	cytosol	57.27	50.38
TraesCSU01G145200.1	Wheat	cytosol	56.92	50.23
KRH33464	Soybean	cytoskeleton, cytosol, nucleus	44.29	45.96
CDY48669	Canola	nucleus	48.96	45.28
KRG90235	Soybean	nucleus	42.91	45.26
CDX86213	Canola	nucleus	48.96	45.21
CDY07249	Canola	cytosol, plastid	41.87	42.53
CDY24874	Canola	cytosol	42.04	41.19
CDX77466	Canola	plastid	74.57	40.17
CDY00019	Canola	mitochondrion	48.62	40.03
CDY57011	Canola	nucleus, plastid	48.27	39.91
CDY31210	Canola	nucleus	34.95	38.92
CDY21008	Canola	cytosol	34.6	38.91
CDX97982	Canola	cytosol, nucleus, peroxisome	38.58	34.9
CDY49802	Canola	endoplasmic reticulum, peroxisome, plasma membrane	37.54	22.42

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.2	UniProt:A0A078I857	InterPro:ANKRD13	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY45348	ProteinID:CDY45348	ProteinID:CDY45348.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00081827001	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF11904
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR12447	PANTHER:PTHR12447:SF17	SUPFAM:SSF48403	UniParc:UPI0004EE44B7
SEG:seg	:	:	:	:	:

Description

BnaC01g30520DBnaC01g30520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I857]

Coordinates

chrLK032621:-:167142..169287

Molecular Weight (calculated)

64778.4 Da

IEP (calculated)

8.852

GRAVY (calculated)

-0.519

Length

578 amino acids

Sequence
(BLAST)

001: MENLDVCKYT HSSVHRAVAS RDYATLRSVL SSLPTPRYPS EILSEASSLA EEAISDAVSA VIDRRDVPSR DTPLHLAVKL CDSTAAEMLM VAGADWTLQN
101: EHGWNALQEA VCSRQESIAM IIWCRRLPRL IATMREMRDF YMEMSFHFES SVVPFVLKVA PSDTYKVWKV GSNLRADMTM AGFDGFKIQR SDQSILFLGD
201: GSEDGKVPRG SLYMVNHKDK EVINTLDGAC GFPPDEDVRK EVASMCKNSV FRPGINVTQA VLNPQTNWRR QEKSEMVGPW KAKAICVNPM ERNGGVDDDL
301: CDVLTDEEKR QLEGALKLDL PDFPNLDLSL SHKKEKKKEW LGGWRRKETT TSKQEKEIKY APPRSSLCVN EKVSNLLGDC NEIKPGRHSV DNEHNRKPRV
401: ASVSSKTHQE SEYKKGLRLV LWLSPNFPLQ TEELLPLLDI LANKVKAICR LRELLTTKLP TGTFPVKVAI PVVPTIKVLV TFTKFEEIDP ADEFKTPPSR
501: PTASSGYESP APSTNSTSSS SWFRRARSNK DGSSSKSQAL QDPFAIPAGY IWVSVESKKK KAEKQKRKKG CKKAEQVS

Best Arabidopsis Sequence Match ( AT3G24210.1 )
(BLAST)

001: MENVDVSKYI HSSVHKAVAS KDYVGLRAIL SSLPKPKDPC EIQTEAASLS EEAKSDTISA VIDRRDVPSR DTPLHLAVKL CDSTSVEMLM VAGADWTLQN
101: EDGWNALQEA VCSRQEAIAM IIVRHYQPLA WAKWCRRLPR LIATMSKMKD FYLEMSFHFE SSVVPFVSKV APSDTYKVWK VGSNLRADMT MAGFDGFKIQ
201: RSDQSILFLG DGSEDGEVAR GSLYMVNHKD KEVMNALDGA CGVPSEEEVR KEVAAMCKSN IFRPGIDVTQ AVLSPQTNWR RQEKSEMVGP WKAKVYEMNN
301: VVVSVKSRKV PGSLAVEGGD DDICDVLTDE EQKQLEDALK LDLPDFPNVN GENGFIVHHQ EDHVEANKKA EKKGWLGGWR KKETKQEKQI QYAPPRSSLC
401: VNEKVSNLLG ESNQIKPGRH SVDNEHYRKP KALVSDKTRH ESEYKKGLRP VLWLSPNFPL QTEELLPLLD ILANKVKAIR RLRELLTTKL PSGTFPVKVA
501: IPVVPTIKVL VTFTKFEEIE PVDEFKTPLS SPTSSGYESP AAATTDFTNS SSSSSWFRRS RSNKDGGSSK SKTLQDPFAI PTGYTWVSLE SKKRKPKKGG
601: KKTEQVS

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:F4J6I7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.