Factsheet for PGSC0003DMT400076190

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g091560.2.1	Tomato	cytosol	98.62	98.62
VIT_05s0136g00240.t01	Wine grape	cytosol	79.91	79.91
GSMUA_Achr5P13140_001	Banana	mitochondrion	61.2	75.43
KRH33461	Soybean	cytosol	74.23	74.58
KRG90233	Soybean	cytosol	73.62	73.96
GSMUA_Achr4P26640_001	Banana	cytosol	66.41	72.05
GSMUA_Achr1P01140_001	Banana	cytosol	57.52	68.56
EER98424	Sorghum	cytosol	68.4	68.51
Os07t0436100-01	Rice	cytosol	68.25	67.84
TraesCS2D01G236000.1	Wheat	cytosol	67.94	67.43
Zm00001d019522_P001	Maize	cytosol	67.48	67.28
CDY18256	Canola	cytosol	66.26	67.08
TraesCS2A01G237500.1	Wheat	cytosol	67.33	67.02
Zm00001d005442_P001	Maize	cytosol	67.33	66.82
TraesCSU01G145200.1	Wheat	cytosol	66.87	66.56
AT1G04780.1	Thale cress	cytosol	66.87	65.66
Bra015348.1-P	Field mustard	cytosol	65.8	65.6
CDX89790	Canola	cytosol	63.5	65.3
AT3G24210.1	Thale cress	nucleus	58.44	62.77
CDX85149	Canola	nucleus, plastid	56.75	62.61
CDY45348	Canola	cytosol	51.99	58.65
HORVU2Hr1G052030.1	Barley	cytosol	8.28	53.47
PGSC0003DMT400060183	Potato	nucleus	52.61	52.13
PGSC0003DMT400025371	Potato	cytosol	46.47	49.92
PGSC0003DMT400042418	Potato	cytosol, plastid	28.22	39.91
PGSC0003DMT400042419	Potato	extracellular, plasma membrane, plastid	8.28	39.71
PGSC0003DMT400025373	Potato	nucleus	8.13	39.26
CDX77466	Canola	plastid	54.6	33.18
Bra015003.1-P	Field mustard	cytosol, plastid	55.98	32.71

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102581013	MapMan:35.2	InterPro:ANKRD13	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	UniProt:M1CWB4	PFAM:PF11904	EnsemblPlantsGene:PGSC0003DMG400029625	PGSC:PGSC0003DMG400029625	EnsemblPlants:PGSC0003DMT400076190
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR12447	PANTHER:PTHR12447:SF17	SMART:SM00248	SUPFAM:SSF48403
UniParc:UPI000295672E	RefSeq:XP_006360337.1	SEG:seg	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400029625]

Coordinates

chr9:+:58433397..58440573

Molecular Weight (calculated)

73619.4 Da

IEP (calculated)

7.804

GRAVY (calculated)

-0.635

Length

652 amino acids

Sequence
(BLAST)

001: MAGIDVSKYA HSPVHKGIVL KDYPSLRKII AALPRLCDPA EIHTEAVSLA EEAKADAISA VIDQRDVPNR DSPLHLAVKL GDETATEMLM LAGADWSLQN
101: EHGWSALQEA ICNREERIAK IIVRHYQPLA WAKWCRRLPR LIGTMKRMRD FYMEITFHFE SSVIPFISRI APSDTYKIWK RGANLRADMT LAGFDGFRIQ
201: RSDQSILFLG DGSEDGKVAP GSLCMISHKE KEIMNALDGA GAPATDAEVQ QEVAAMSQTN IFRPGIDVTE AVLLPQTTWR RQEKTEMVGS WKAKVYDMHN
301: VVVSIKSRMV PGAMTDDEFF NSCNENEAES EEFDDILTEE ERRQLEVALK SDSSDLSNEN GDGIIPHRHS CYEQRDIPIE ELNGCRNDDN KQEKKRWFNS
401: WRKRDIKPEG EKRVVPPRSS ICVEEKVGNY LEGSSPLNET RPGRHSVDVR VTRDELRQGR DAKASTSSNA ENGNRRKDGS RENEYKKGLR PVLWLSPDFP
501: LRTEELLPLL DILANKVKAI RRLREILTTK LPKGTFPVKV AIPVVPTIRV LVTFTKFEEL QPLDEFATPP SSPTASGRES PSGAQPSSSS WFQWIKAPYQ
601: RPGSSTGSPS NRIENIQDPF VVPQDYTWIS AEAKRKKMQE KDKAKKGKSR KQ

Best Arabidopsis Sequence Match ( AT1G04780.1 )
(BLAST)

001: MASSTIDVTK YGHSPVHHAV VTRDYAGLKK LLSALPKMRD PSEVQNEAAS VAEETKADSI AAVIDRRDVV NRDTALHLAV KLGDETSAEM LMAAGADWSL
101: QNEHGWSALQ EAICGREERI AMIIVRHYQP LAWAKWCRRL PRLVATMHRM RDFYMEITFH FESSVIPFIS RVAPSDTYKI WKRGANLRAD MTLAGFDGFR
201: IQRSDQTILF LGDGSEDGKV PSGSLLMISH KDKEIMNALD GAGAAASEEE VRQEVAAMSK TSIFRPGIDV TQAVLFPQLT WRRQEKTEMV GQWKAKVYDM
301: HNVVVSIKSR RVPGAMTDEE LFSNTNQEND TESEDLGDIL TEDEKRQLEL ALKLDSPEES SNGESSRISQ KQNSCSFEDR EIPVTDGNGY CKQEKKGWFS
401: GWRKREEGHR RSSVPPRNSL CVDEKVSDLL GDDDSPSRGG RQIKPGRHST VETVVRNENR GLRDSSKAST SEGSGSSKRK EGNKENEYKK GLRPVLWLSE
501: RFPLQTKELL PLLDILANKV KAIRRLRELM TTKLPSGTFP VKVAIPVIPT IRVLVTFTKF EELEAIEDEF VTPPSSPTSS VKNSPREETQ SSSNPSSSWF
601: QWIKTPSQRP STSSSSGGFN IGKAENDQDP FAIPRGYNWI TAEEKKKKVQ EKNKAKKGKS SQNS

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8GXW8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.