Factsheet for PGSC0003DMT400025373

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g036630.1.1	Tomato	endoplasmic reticulum	70.37	62.5
PGSC0003DMT400042419	Potato	extracellular, plasma membrane, plastid	34.07	33.82
KRG97040	Soybean	nucleus	65.19	28.57
VIT_14s0036g01030.t01	Wine grape	nucleus	65.93	13.48
KRH68787	Soybean	nucleus	65.93	12.92
KRG92643	Soybean	cytosol	61.48	12.87
PGSC0003DMT400060183	Potato	nucleus	61.48	12.61
TraesCS6A01G379500.1	Wheat	nucleus	56.3	12.06
KRH34141	Soybean	plastid	64.44	12.0
TraesCS6D01G363800.1	Wheat	nucleus	54.81	11.75
TraesCS6B01G417700.1	Wheat	nucleus	54.81	11.75
EES05988	Sorghum	nucleus	54.07	11.57
Os02t0810100-00	Rice	plasma membrane	54.07	11.53
Zm00001d018443_P001	Maize	mitochondrion	53.33	11.41
GSMUA_Achr10P...	Banana	nucleus	51.11	11.24
GSMUA_Achr11P...	Banana	nucleus	52.59	11.08
Zm00001d051948_P001	Maize	cytosol	51.85	11.08
Bra036125.1-P	Field mustard	nucleus	48.15	10.55
Bra010013.1-P	Field mustard	nucleus	48.89	10.19
CDY48669	Canola	nucleus	45.93	9.92
CDX86213	Canola	nucleus	45.93	9.9
HORVU6Hr1G089010.1	Barley	nucleus	54.07	9.59
AT3G04470.1	Thale cress	nucleus	45.19	9.53
CDY57011	Canola	nucleus, plastid	48.15	9.3
CDY00019	Canola	mitochondrion	48.15	9.26
PGSC0003DMT400076190	Potato	cytosol	39.26	8.13
PGSC0003DMT400025371	Potato	cytosol	9.63	2.14
PGSC0003DMT400042418	Potato	cytosol, plastid	4.44	1.3
KRG97041	Soybean	cytoskeleton, cytosol, nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400025373	EnsemblPlantsGene:PGSC0003DMG400009794	InterPro:ANKRD13	PANTHER:PTHR12447	PANTHER:PTHR12447:SF17	PFAM:PF11904
PGSC:PGSC0003DMG400009794	SEG:seg	UniParc:UPI0002958973	UniProt:M1ALD2	MapMan:35.2	:

Description

Ankyrin repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009794]

Coordinates

chr6:-:21047497..21048506

Molecular Weight (calculated)

15456.1 Da

IEP (calculated)

10.301

GRAVY (calculated)

-0.832

Length

135 amino acids

Sequence
(BLAST)

001: MEFRIDSLYS AASQVAIPVV PTIRVLVTFT KFEELQPVEE FSTPPSSPAH FQDAKSKQSD GSASWISWMR GSHGGQSSDS ESHSFREEIN PFHIPSDYAW
101: VDANEKKRRM KAKKAKSRKQ KKHVTTKFRY WTPGH

Best Arabidopsis Sequence Match ( AT3G04470.1 )
(BLAST)

001: MEDYSKYTHS PAHLAVVLRD HAALRRIVSD LPRLAKAGEV TTEAESMESE SRADSVSAVI DRRDVPGRET PLHLAVRLRD PVSAEILMSA GADWSLQNEN
101: GWSALQEAVC TREEAIAMII ARHYQPLAWA KWCRRLPRII ASASRIRDFY MEITFHFESS VIPFIGRIAP SDTYRIWKRG SNLRADMTLA GFDGFKIQRS
201: DQTFLFLGDG YSSEDGKMSL SPGSLIVLSH KEKEMTNALE GAGAQPTDAE VAHEVALMSQ TNMYRPGIDV TQAELVSHLN WRRQERTEMV GNWKAKVYDM
301: LHVMVSVKSR RVPGAMTDEE LFAVDEERTA VTNGAETDGF EDVLTPEERL QLNSALQTGN SDAIEDEECE VTDQQENGAL KDKKGWFGWN KKGSNTEDTK
401: LKKGSKSAPE DGNQKGKSQK SSMVSDHANE DHGDAKKGKE KKKKKKGVAG DEVKRESEYK KGLRPVLWLT PDFPLTTDEL LPLLDILANK VKAVRRLREL
501: LTTKLPLGTF PVKLAIPIIP TVRVVVTFTK FEELQAAEEE FSTPPSSPVF HDAKSSSSEN SSPSWISWMR SGKSSDNDSN RYKDEADPFL IPSDYKWIDS
601: AEKKRRMKAK KAKSRRKKQA ATKAAGASDS GTRSNHVAEE

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9M840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.