CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86213	Canola	nucleus	89.76	89.62
KRG97041	Soybean	cytoskeleton, cytosol, nucleus	35.2	76.12
AT3G04470.1	Thale cress	nucleus	77.28	75.47
CDY57011	Canola	nucleus, plastid	79.68	71.24
CDY00019	Canola	mitochondrion	79.04	70.37
TraesCS6D01G363800.1	Wheat	nucleus	68.64	68.1
Zm00001d051948_P001	Maize	cytosol	68.8	68.04
TraesCS6A01G379500.1	Wheat	nucleus	68.48	67.94
EES05988	Sorghum	nucleus	68.48	67.83
TraesCS6B01G417700.1	Wheat	nucleus	68.32	67.78
GSMUA_Achr10P...	Banana	nucleus	66.4	67.59
Os02t0810100-00	Rice	plasma membrane	68.16	67.3
VIT_14s0036g01030.t01	Wine grape	nucleus	71.04	67.27
Zm00001d018443_P001	Maize	mitochondrion	67.84	67.19
GSMUA_Achr11P...	Banana	nucleus	68.48	66.77
KRG92643	Soybean	cytosol	68.8	66.67
PGSC0003DMT400060183	Potato	nucleus	69.92	66.41
Solyc05g054970.2.1	Tomato	extracellular, nucleus	69.76	66.26
KRH68787	Soybean	nucleus	70.56	64.01
PGSC0003DMT400025371	Potato	cytosol	61.6	63.43
KRH34141	Soybean	plastid	69.76	60.14
Solyc06g036620.1.1	Tomato	cytosol, nucleus, plastid	55.84	55.66
HORVU6Hr1G089010.1	Barley	nucleus	67.04	55.06
CDX89790	Canola	cytosol	55.04	54.26
CDY18256	Canola	cytosol	55.84	54.19
CDX85149	Canola	nucleus, plastid	49.6	52.45
CDY45348	Canola	cytosol	45.28	48.96
Solyc06g036630.1.1	Tomato	endoplasmic reticulum	11.68	48.03
KRG97040	Soybean	nucleus	23.2	47.08
PGSC0003DMT400025373	Potato	nucleus	9.92	45.93
CDY31210	Canola	nucleus	36.96	44.51
CDY07249	Canola	cytosol, plastid	40.32	44.29
CDY21008	Canola	cytosol	35.84	43.58
CDY24874	Canola	cytosol	41.12	43.56
CDX97982	Canola	cytosol, nucleus, peroxisome	40.96	40.06
CDX77466	Canola	plastid	48.96	28.52
CDY49802	Canola	endoplasmic reticulum, peroxisome, plasma membrane	39.68	25.62

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.2	UniProt:A0A078IGZ5	InterPro:ANKRD13	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY48669	ProteinID:CDY48669	ProteinID:CDY48669.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00091536001	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF11904
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR12447	PANTHER:PTHR12447:SF17	SUPFAM:SSF48403	UniParc:UPI0004EDDCFB
SEG:seg	:	:	:	:	:

Description

BnaC07g27400DBnaC07g27400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGZ5]

Coordinates

chrLK032785:+:96509..99234

Molecular Weight (calculated)

69489.7 Da

IEP (calculated)

7.248

GRAVY (calculated)

-0.687

Length

625 amino acids

Sequence
(BLAST)

001: MEDYSKYTHS PAHLAVVLHD HAALRRIVID LPSLAKAGEV TNEAESLEAE SRADAVTAVI DRRDVPGRET PLHLAVRMRD PVSAEILMSA GADWSLQNEN
101: GWSALQEAVC TREEAIAMII ARHYQPLAWA KWCRRLPRIT ASASRIRDFY MEITFHFESS VIPFISRIAP SDTYRIWKRG SNLRADMTLA GFDGFRIQRS
201: DQTFLFLGEG YASDDGKVSL PPGSLIVLSH KEKEVTNALE GAGAQPTEAE VAHEVAHMSQ TNMYRPGIDV TQADLVPQSN WRRQERTETV GSWKAKVYDM
301: MHVMVSVKSR RVPGAMTDEE LFAVDEDRTA NGAENDGFED VLTAEERKQL DSALRMGNSE AAEDEENDVD DHGSGGEANG APLKEKKGWF GWNKKGAKPG
401: HDGEKGKSQR SSTLSDNNSK EDAGDGKKGK DKGGAKKKKN ESEYKKGLRP VLWLTPDFPL KTEELLPLLD ILANKVKAVR RLRELLTTKL PTGTFPVKIA
501: IPIIPTVRVL ITFTKFEELQ PSEEFSTPPT SPVFHDAKSS DSSSSASWVS WMKGTRGGGQ SSDGDSNRYR DSEVDPFMIP SDYKWVDSAE KKRRMKAKKA
601: RIRKNRKQGA SKPSSSSSRS NQEPE

Best Arabidopsis Sequence Match ( AT3G04470.1 )
(BLAST)

001: MEDYSKYTHS PAHLAVVLRD HAALRRIVSD LPRLAKAGEV TTEAESMESE SRADSVSAVI DRRDVPGRET PLHLAVRLRD PVSAEILMSA GADWSLQNEN
101: GWSALQEAVC TREEAIAMII ARHYQPLAWA KWCRRLPRII ASASRIRDFY MEITFHFESS VIPFIGRIAP SDTYRIWKRG SNLRADMTLA GFDGFKIQRS
201: DQTFLFLGDG YSSEDGKMSL SPGSLIVLSH KEKEMTNALE GAGAQPTDAE VAHEVALMSQ TNMYRPGIDV TQAELVSHLN WRRQERTEMV GNWKAKVYDM
301: LHVMVSVKSR RVPGAMTDEE LFAVDEERTA VTNGAETDGF EDVLTPEERL QLNSALQTGN SDAIEDEECE VTDQQENGAL KDKKGWFGWN KKGSNTEDTK
401: LKKGSKSAPE DGNQKGKSQK SSMVSDHANE DHGDAKKGKE KKKKKKGVAG DEVKRESEYK KGLRPVLWLT PDFPLTTDEL LPLLDILANK VKAVRRLREL
501: LTTKLPLGTF PVKLAIPIIP TVRVVVTFTK FEELQAAEEE FSTPPSSPVF HDAKSSSSEN SSPSWISWMR SGKSSDNDSN RYKDEADPFL IPSDYKWIDS
601: AEKKRRMKAK KAKSRRKKQA ATKAAGASDS GTRSNHVAEE

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9M840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.