Factsheet for PGSC0003DMT400060183

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054970.2.1	Tomato	extracellular, nucleus	98.78	98.78
VIT_14s0036g01030.t01	Wine grape	nucleus	80.4	80.15
KRG97041	Soybean	cytoskeleton, cytosol, nucleus	33.89	77.16
KRG92643	Soybean	cytosol	72.95	74.42
PGSC0003DMT400025371	Potato	cytosol	67.78	73.48
KRH68787	Soybean	nucleus	76.14	72.71
CDX86213	Canola	nucleus	67.78	71.25
GSMUA_Achr11P...	Banana	nucleus	68.54	70.36
CDY48669	Canola	nucleus	66.41	69.92
AT3G04470.1	Thale cress	nucleus	67.33	69.22
GSMUA_Achr10P...	Banana	nucleus	64.29	68.89
Bra036125.1-P	Field mustard	nucleus	64.29	68.67
Os02t0810100-00	Rice	plasma membrane	65.96	68.56
EES05988	Sorghum	nucleus	65.2	67.99
Bra010013.1-P	Field mustard	nucleus	66.41	67.44
Zm00001d051948_P001	Maize	cytosol	64.59	67.25
Zm00001d018443_P001	Maize	mitochondrion	64.44	67.19
TraesCS6B01G417700.1	Wheat	nucleus	63.83	66.67
TraesCS6A01G379500.1	Wheat	nucleus	63.22	66.03
TraesCS6D01G363800.1	Wheat	nucleus	63.22	66.03
KRH34141	Soybean	plastid	72.49	65.79
PGSC0003DMT400025373	Potato	nucleus	12.61	61.48
CDY00019	Canola	mitochondrion	64.59	60.54
CDY57011	Canola	nucleus, plastid	64.13	60.37
KRG97040	Soybean	nucleus	25.84	55.19
HORVU6Hr1G089010.1	Barley	nucleus	61.4	53.09
PGSC0003DMT400076190	Potato	cytosol	52.13	52.61
PGSC0003DMT400042419	Potato	extracellular, plasma membrane, plastid	8.51	41.18
PGSC0003DMT400042418	Potato	cytosol, plastid	27.81	39.7

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102591768	MapMan:35.2	InterPro:ANKRD13	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	UniProt:M1C5C7	PFAM:PF11904	EnsemblPlantsGene:PGSC0003DMG400023410	PGSC:PGSC0003DMG400023410	EnsemblPlants:PGSC0003DMT400060183
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR12447	PANTHER:PTHR12447:SF17	SMART:SM00248	SUPFAM:SSF48403
UniParc:UPI000294DDA3	RefSeq:XP_006345899.1	RefSeq:XP_006345900.1	RefSeq:XP_015163568.1	SEG:seg	:

Description

Ankyrin repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023410]

Coordinates

chr5:-:50670398..50676166

Molecular Weight (calculated)

74005.0 Da

IEP (calculated)

6.359

GRAVY (calculated)

-0.719

Length

658 amino acids

Sequence
(BLAST)

001: MEDWSKYVHS PAHLAVAKRD YATLKRIVAD LPQLSKAGEV NTETESLAAE LNADSVSAVI DRRDVPGRET PLHLAVRMRD PVSAEILMAA GADWSLQNEN
101: GWSALQEAVC TKEENIAMII ARHYQPLAWA KWCRRLPRIV ASAGRIRDFY MEITFHFESS VIPFIGRIAP SDTYRIWKRG SNLRADMTLA GFDGFRIQRS
201: DQTFLFLGEG YSSEDGNRSL SPGSLIVLAH KEKEITNALE GAGVQPSEAE VAREVALMSQ TNMYRPGIDV TQAELIPHLN WRRQERSEMV GTWKAKVYDM
301: LNVMVSVKSR RVPGAITDEE LFTVNDDEKV VNGGDDDYDD ALTAEERMQL DSALRMGNSD GPGEYEEPEV HDFHGNSDGG SFQSCESNGV TKEKKSWFGW
401: SKKGPKDTSD DSEDSKLVKK FSKLAPEDSK LRPNDNHASS SEVPREDSGD GKRSKDKSSK KKKKKGTIGE PKTESEYKKG LRPVLWLTPD FPLKTEELLP
501: LLDILANKVK AVRRLRELLT TKLPPGTFPV KVAIPIVPTI RVLVTFTKFE ELEPVDEFST PLSSPTNFQD AKSKESDGST SWISWMKGNR DELSSDSRNH
601: SFQDEIDPFR IPSDYVWVDA NEKKRRMKAK KARNKKHKKH SAARNPENGQ QTSEDVEE

Best Arabidopsis Sequence Match ( AT3G04470.1 )
(BLAST)

001: MEDYSKYTHS PAHLAVVLRD HAALRRIVSD LPRLAKAGEV TTEAESMESE SRADSVSAVI DRRDVPGRET PLHLAVRLRD PVSAEILMSA GADWSLQNEN
101: GWSALQEAVC TREEAIAMII ARHYQPLAWA KWCRRLPRII ASASRIRDFY MEITFHFESS VIPFIGRIAP SDTYRIWKRG SNLRADMTLA GFDGFKIQRS
201: DQTFLFLGDG YSSEDGKMSL SPGSLIVLSH KEKEMTNALE GAGAQPTDAE VAHEVALMSQ TNMYRPGIDV TQAELVSHLN WRRQERTEMV GNWKAKVYDM
301: LHVMVSVKSR RVPGAMTDEE LFAVDEERTA VTNGAETDGF EDVLTPEERL QLNSALQTGN SDAIEDEECE VTDQQENGAL KDKKGWFGWN KKGSNTEDTK
401: LKKGSKSAPE DGNQKGKSQK SSMVSDHANE DHGDAKKGKE KKKKKKGVAG DEVKRESEYK KGLRPVLWLT PDFPLTTDEL LPLLDILANK VKAVRRLREL
501: LTTKLPLGTF PVKLAIPIIP TVRVVVTFTK FEELQAAEEE FSTPPSSPVF HDAKSSSSEN SSPSWISWMR SGKSSDNDSN RYKDEADPFL IPSDYKWIDS
601: AEKKRRMKAK KAKSRRKKQA ATKAAGASDS GTRSNHVAEE

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9M840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.