Factsheet for GSMUA_Achr11P06880_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	80.5	84.04
KRG97041	Soybean	cytoskeleton, cytosol, nucleus	34.17	75.78
Zm00001d018443_P001	Maize	mitochondrion	71.14	72.27
EES05988	Sorghum	nucleus	71.14	72.27
Os02t0810100-00	Rice	plasma membrane	71.29	72.2
Zm00001d051948_P001	Maize	cytosol	71.14	72.15
VIT_14s0036g01030.t01	Wine grape	nucleus	72.7	70.61
TraesCS6A01G379500.1	Wheat	nucleus	68.95	70.16
TraesCS6B01G417700.1	Wheat	nucleus	68.64	69.84
TraesCS6D01G363800.1	Wheat	nucleus	68.49	69.68
CDX86213	Canola	nucleus	67.24	68.85
Solyc05g054970.2.1	Tomato	extracellular, nucleus	70.36	68.54
PGSC0003DMT400060183	Potato	nucleus	70.36	68.54
CDY48669	Canola	nucleus	66.77	68.48
KRG92643	Soybean	cytosol	67.55	67.13
Bra036125.1-P	Field mustard	nucleus	64.43	67.05
AT3G04470.1	Thale cress	nucleus	66.3	66.41
KRH68787	Soybean	nucleus	71.14	66.18
Bra010013.1-P	Field mustard	nucleus	65.99	65.28
GSMUA_Achr5P13140_001	Banana	mitochondrion	53.2	64.46
PGSC0003DMT400025371	Potato	cytosol	59.44	62.77
KRH34141	Soybean	plastid	68.17	60.28
CDY57011	Canola	nucleus, plastid	64.59	59.23
CDY00019	Canola	mitochondrion	64.43	58.83
GSMUA_Achr4P26640_001	Banana	cytosol	54.91	58.57
GSMUA_Achr1P01140_001	Banana	cytosol	49.77	58.32
Solyc06g036620.1.1	Tomato	cytosol, nucleus, plastid	54.76	55.98
HORVU6Hr1G089010.1	Barley	nucleus	66.3	55.85
Solyc06g036630.1.1	Tomato	endoplasmic reticulum	12.48	52.63
PGSC0003DMT400025373	Potato	nucleus	11.08	52.59
KRG97040	Soybean	nucleus	23.09	48.05
GSMUA_Achr2P13940_001	Banana	cytosol	39.78	44.5

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.2	InterPro:ANKRD13	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr11G06880_001	EnsemblPlants:GSMUA_Achr11P06880_001
EnsemblPlants:GSMUA_Achr11T06880_001	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0RQ18	PFAM:PF11904
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR12447	PANTHER:PTHR12447:SF17	SUPFAM:SSF48403	UniParc:UPI000294DA1F
SEG:seg	:	:	:	:	:

Description

ankyrin repeat domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G06880_001]

Coordinates

chr11:-:5425881..5430179

Molecular Weight (calculated)

71858.0 Da

IEP (calculated)

6.807

GRAVY (calculated)

-0.652

Length

641 amino acids

Sequence
(BLAST)

001: MEDLSKYAHS PAHVAVARRD HAGLRRMVAA LPRLPKAGEV TTEEESLAGE LTADAVSAVI DRRDVPHRET PLHLAVRMRD PISAEILMSA GADWSLQNEH
101: GWSALQEAVC TREDAIAMII ARHYQPLAWA KWCRRLPRIV SSIERILDFY MEITFHFESS VIPFISRIAP SDTYRIWKRG PNLRADMTLA GFDGFRIQRS
201: DQTFLFLGQG APAEDVHPPL PPGSLIVLAH KEKEITNALE GAGAKPTEAE VAHEVALMSQ TNMYRPGIDV TQAELVPHLN WRRQERAEMV GNWKTKVYDM
301: LNVMVSVKSR RVPGAMTDEE LFTVDNDERI ANGGDLDGEL DDVLTPEERM QLDSALRMDN SQGLDESEGN SGALEGVENS ESNGVTKERT SWFGWSSKRT
401: SKNTGGDDAD DVKNKHVKLC PENGHHKSES AKEMGDIKKG KEKGSKKKTG NESNKHESEF KKGVRPVLWL TPDFPLKTDE LLPLLDILAN KVKAVRRLRE
501: LLTTKLPQGT FPVKLAIPIV PTIRVLITFT KFEELQQSDE FSTPLSSPTH FQESKAKETE GSGSWYSWVK RSRGGQSSDS SEGRSCKDEI DPFHIPSDYT
601: WIDATEKKRR MKAKKGKSKR GTNRKQSTRG SEDQQLLDGF E

Best Arabidopsis Sequence Match ( AT3G04470.1 )
(BLAST)

001: MEDYSKYTHS PAHLAVVLRD HAALRRIVSD LPRLAKAGEV TTEAESMESE SRADSVSAVI DRRDVPGRET PLHLAVRLRD PVSAEILMSA GADWSLQNEN
101: GWSALQEAVC TREEAIAMII ARHYQPLAWA KWCRRLPRII ASASRIRDFY MEITFHFESS VIPFIGRIAP SDTYRIWKRG SNLRADMTLA GFDGFKIQRS
201: DQTFLFLGDG YSSEDGKMSL SPGSLIVLSH KEKEMTNALE GAGAQPTDAE VAHEVALMSQ TNMYRPGIDV TQAELVSHLN WRRQERTEMV GNWKAKVYDM
301: LHVMVSVKSR RVPGAMTDEE LFAVDEERTA VTNGAETDGF EDVLTPEERL QLNSALQTGN SDAIEDEECE VTDQQENGAL KDKKGWFGWN KKGSNTEDTK
401: LKKGSKSAPE DGNQKGKSQK SSMVSDHANE DHGDAKKGKE KKKKKKGVAG DEVKRESEYK KGLRPVLWLT PDFPLTTDEL LPLLDILANK VKAVRRLREL
501: LTTKLPLGTF PVKLAIPIIP TVRVVVTFTK FEELQAAEEE FSTPPSSPVF HDAKSSSSEN SSPSWISWMR SGKSSDNDSN RYKDEADPFL IPSDYKWIDS
601: AEKKRRMKAK KAKSRRKKQA ATKAAGASDS GTRSNHVAEE

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9M840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.