Factsheet for PGSC0003DMT400025371

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97041	Soybean	cytoskeleton, cytosol, nucleus	36.08	75.78
Solyc06g036620.1.1	Tomato	cytosol, nucleus, plastid	76.94	74.48
PGSC0003DMT400060183	Potato	nucleus	73.48	67.78
VIT_14s0036g01030.t01	Wine grape	nucleus	70.68	65.0
CDX86213	Canola	nucleus	64.91	62.94
KRG92643	Soybean	cytosol	65.57	61.71
CDY48669	Canola	nucleus	63.43	61.6
AT3G04470.1	Thale cress	nucleus	64.58	61.25
Bra036125.1-P	Field mustard	nucleus	60.79	59.9
KRH68787	Soybean	nucleus	67.87	59.8
GSMUA_Achr11P...	Banana	nucleus	62.77	59.44
Bra010013.1-P	Field mustard	nucleus	63.1	59.1
GSMUA_Achr10P...	Banana	nucleus	59.64	58.96
EES05988	Sorghum	nucleus	60.13	57.84
Os02t0810100-00	Rice	plasma membrane	60.13	57.66
Zm00001d051948_P001	Maize	cytosol	59.97	57.59
TraesCS6A01G379500.1	Wheat	nucleus	59.31	57.14
TraesCS6D01G363800.1	Wheat	nucleus	59.31	57.14
TraesCS6B01G417700.1	Wheat	nucleus	59.14	56.98
Zm00001d018443_P001	Maize	mitochondrion	59.14	56.89
KRH34141	Soybean	plastid	65.4	54.76
CDY00019	Canola	mitochondrion	61.45	53.13
CDY57011	Canola	nucleus, plastid	60.46	52.5
PGSC0003DMT400076190	Potato	cytosol	49.92	46.47
HORVU6Hr1G089010.1	Barley	nucleus	57.0	45.47
PGSC0003DMT400042418	Potato	cytosol, plastid	28.83	37.96
KRG97040	Soybean	nucleus	15.32	30.19
PGSC0003DMT400042419	Potato	extracellular, plasma membrane, plastid	3.62	16.18
PGSC0003DMT400025373	Potato	nucleus	2.14	9.63

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.2	InterPro:ANKRD13	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
UniProt:M1ALD0	PFAM:PF11904	EnsemblPlantsGene:PGSC0003DMG400009793	PGSC:PGSC0003DMG400009793	EnsemblPlants:PGSC0003DMT400025371	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR12447	PANTHER:PTHR12447:SF17	SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI000294F3D9
SEG:seg	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400009793]

Coordinates

chr6:-:21061847..21067005

Molecular Weight (calculated)

67950.6 Da

IEP (calculated)

7.054

GRAVY (calculated)

-0.576

Length

607 amino acids

Sequence
(BLAST)

001: MEDWSKYVHS PAHLAVAKRD YPTLKEIVDC LPCLAKAGEV NTEAESVAAE IDADAVSAVI DRRDVPGRET PLHLAVRLRD PICAEILMSA GADWSLQNEN
101: GWSALQEAVC TREENIAMII ARHYQPLAWA KWCRRLPRIV ASAARIRDFY MEITFHFESS VIPFIGRIAP SDTYRIWKWG SNLRADMTLA GFDGFRIQRS
201: DQTFLFLGEG YSSETSSISL PPGSLIVLAH KEKEITNALE GAGVQPSEAE VAHEVALMSQ TNMYRPGIDV TQAELVPHLN WRRQERTEMV GTWKANVYDM
301: LHVMVSVKSR RVPGAMTDEE LFSMNDDGKL TNCGEHDDYN GVLTAEERMQ LDSAFRTGNS DGLGDDEELE VQDCHDNSSG GSFRSCESNG VPKEKKSWFG
401: WNKKNSKGTG DDLENSKIVK RFSKLAPDNT KQKSHDTHRS SSEVQGEDTE DVKRSKDKNG KKKKKKGPLG ESKSESEYKK GLRPILWLTP DFPLKTEELL
501: PLLDILANKV KAIRRLRELL TTKLPPDTFP VKTGKLLGAD FQGHEQEALE LPLQVDSARQ ARHKDAAVVC KKTRFKGSKE LKSLVAFDVK FKSGGGREKG
601: RNFLTIS

Best Arabidopsis Sequence Match ( AT3G04470.1 )
(BLAST)

001: MEDYSKYTHS PAHLAVVLRD HAALRRIVSD LPRLAKAGEV TTEAESMESE SRADSVSAVI DRRDVPGRET PLHLAVRLRD PVSAEILMSA GADWSLQNEN
101: GWSALQEAVC TREEAIAMII ARHYQPLAWA KWCRRLPRII ASASRIRDFY MEITFHFESS VIPFIGRIAP SDTYRIWKRG SNLRADMTLA GFDGFKIQRS
201: DQTFLFLGDG YSSEDGKMSL SPGSLIVLSH KEKEMTNALE GAGAQPTDAE VAHEVALMSQ TNMYRPGIDV TQAELVSHLN WRRQERTEMV GNWKAKVYDM
301: LHVMVSVKSR RVPGAMTDEE LFAVDEERTA VTNGAETDGF EDVLTPEERL QLNSALQTGN SDAIEDEECE VTDQQENGAL KDKKGWFGWN KKGSNTEDTK
401: LKKGSKSAPE DGNQKGKSQK SSMVSDHANE DHGDAKKGKE KKKKKKGVAG DEVKRESEYK KGLRPVLWLT PDFPLTTDEL LPLLDILANK VKAVRRLREL
501: LTTKLPLGTF PVKLAIPIIP TVRVVVTFTK FEELQAAEEE FSTPPSSPVF HDAKSSSSEN SSPSWISWMR SGKSSDNDSN RYKDEADPFL IPSDYKWIDS
601: AEKKRRMKAK KAKSRRKKQA ATKAAGASDS GTRSNHVAEE

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9M840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.