CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97041	Soybean	cytoskeleton, cytosol, nucleus	36.12	80.62
KRH34141	Soybean	plastid	89.3	79.45
VIT_14s0036g01030.t01	Wine grape	nucleus	78.6	76.82
KRH68787	Soybean	nucleus	80.47	75.33
PGSC0003DMT400060183	Potato	nucleus	74.42	72.95
Solyc05g054970.2.1	Tomato	extracellular, nucleus	73.95	72.49
CDX86213	Canola	nucleus	69.61	71.73
EES05988	Sorghum	nucleus	67.91	69.41
Os02t0810100-00	Rice	plasma membrane	67.6	68.88
Zm00001d051948_P001	Maize	cytosol	67.44	68.83
CDY48669	Canola	nucleus	66.67	68.8
Bra036125.1-P	Field mustard	nucleus	65.43	68.51
TraesCS6B01G417700.1	Wheat	nucleus	66.82	68.41
Zm00001d018443_P001	Maize	mitochondrion	66.82	68.3
AT3G04470.1	Thale cress	nucleus	67.6	68.12
TraesCS6D01G363800.1	Wheat	nucleus	66.51	68.1
Bra010013.1-P	Field mustard	nucleus	68.37	68.06
TraesCS6A01G379500.1	Wheat	nucleus	66.36	67.94
GSMUA_Achr11P...	Banana	nucleus	67.13	67.55
GSMUA_Achr10P...	Banana	nucleus	63.57	66.78
PGSC0003DMT400025371	Potato	cytosol	61.71	65.57
Solyc06g036630.1.1	Tomato	endoplasmic reticulum	14.57	61.84
PGSC0003DMT400025373	Potato	nucleus	12.87	61.48
CDY00019	Canola	mitochondrion	65.58	60.26
CDY57011	Canola	nucleus, plastid	64.65	59.66
KRG97040	Soybean	nucleus	28.37	59.42
Solyc06g036620.1.1	Tomato	cytosol, nucleus, plastid	57.36	59.01
HORVU6Hr1G089010.1	Barley	nucleus	64.19	54.4
KRG90233	Soybean	cytosol	53.18	52.85
KRH33461	Soybean	cytosol	52.87	52.54
KRH02059	Soybean	cytosol	42.17	48.4
KRH51100	Soybean	cytosol	41.86	47.54
KRH36464	Soybean	plastid	41.86	46.63
KRH33464	Soybean	cytoskeleton, cytosol, nucleus	40.16	46.5
KRH11439	Soybean	nucleus	41.86	45.84
KRG90235	Soybean	nucleus	38.29	45.07

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100801892	MapMan:35.2	EMBL:ACUP02012764	InterPro:ANKRD13	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:GLYMA_20G223500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	UniProt:I1NIN6	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	EnsemblPlants:KRG92643	ProteinID:KRG92643	ProteinID:KRG92643.1	PFAM:PF11904
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR12447	PANTHER:PTHR12447:SF17	SUPFAM:SSF48403	UniParc:UPI000233DD09
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:45807059..45810847

Molecular Weight (calculated)

72349.8 Da

IEP (calculated)

7.076

GRAVY (calculated)

-0.627

Length

645 amino acids

Sequence
(BLAST)

001: MEDISKYAHS PAHVAVARRD HAALRRLVST IPRLAKAGEV NTEAESLAAE LKADEVSAVI DRRDVPGRET PLHLAVRLRD PVSAEILMCG GADWSLQNEH
101: GWSALQEAVC TREEAIAVII ARHYQPLAWA KWCRRLPRIV ASAARIRDFY MEISFHFESS VIPFIGRIAP SDTYRIWKRG SNLRADMTLA GFDGFRIQRS
201: DQTFLFLGEG YASENGNLNF PPGSLLALAH KEKEVTNALE GAGTQPTEAE VNHEVSLMSQ TNMYRPGIDV TQAELVPHLN WRRQEKTEMV GNWKAMVYDM
301: LHVMVSVKSR RVPGAMTDEE LFAVDDGESM VNRENNDEYD DVLTAEEKMQ LDSALRMGNS DGICQDGEPG FDGHENGSAA SNCEANGGGV KEKKGWFGWN
401: KKNIKGGDEP GDLKTAKKFS GDQQKPQPEF VKEDPGETKK GKDKNLRRKK KKGGINESKN ESEYKKGLRP VLWLTPDFPL RTDELLPLLD ILANKVKAIR
501: RLRELLTTKL PLGTFPVKVA IPIVPTIRVL VTFTKFEELQ PAEEFSTPLS SPAYFQDAKS KESEGSTSWI SWMKGSHGTQ SIDSDSHRFK DEIDPFNIPL
601: DYKWVDANER KRRMKAKRAK NMKHKKQTAK GGDGVQLGSE DVEEY

Best Arabidopsis Sequence Match ( AT3G04470.1 )
(BLAST)

001: MEDYSKYTHS PAHLAVVLRD HAALRRIVSD LPRLAKAGEV TTEAESMESE SRADSVSAVI DRRDVPGRET PLHLAVRLRD PVSAEILMSA GADWSLQNEN
101: GWSALQEAVC TREEAIAMII ARHYQPLAWA KWCRRLPRII ASASRIRDFY MEITFHFESS VIPFIGRIAP SDTYRIWKRG SNLRADMTLA GFDGFKIQRS
201: DQTFLFLGDG YSSEDGKMSL SPGSLIVLSH KEKEMTNALE GAGAQPTDAE VAHEVALMSQ TNMYRPGIDV TQAELVSHLN WRRQERTEMV GNWKAKVYDM
301: LHVMVSVKSR RVPGAMTDEE LFAVDEERTA VTNGAETDGF EDVLTPEERL QLNSALQTGN SDAIEDEECE VTDQQENGAL KDKKGWFGWN KKGSNTEDTK
401: LKKGSKSAPE DGNQKGKSQK SSMVSDHANE DHGDAKKGKE KKKKKKGVAG DEVKRESEYK KGLRPVLWLT PDFPLTTDEL LPLLDILANK VKAVRRLREL
501: LTTKLPLGTF PVKLAIPIIP TVRVVVTFTK FEELQAAEEE FSTPPSSPVF HDAKSSSSEN SSPSWISWMR SGKSSDNDSN RYKDEADPFL IPSDYKWIDS
601: AEKKRRMKAK KAKSRRKKQA ATKAAGASDS GTRSNHVAEE

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9M840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.