Factsheet for Bra010013.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86213	Canola	nucleus	87.65	90.73
Bra036125.1-P	Field mustard	nucleus	77.47	81.49
KRG97041	Soybean	cytoskeleton, cytosol, nucleus	34.1	76.47
AT3G04470.1	Thale cress	nucleus	73.77	74.69
KRG92643	Soybean	cytosol	68.06	68.37
VIT_14s0036g01030.t01	Wine grape	nucleus	68.98	67.73
Zm00001d051948_P001	Maize	cytosol	65.28	66.93
EES05988	Sorghum	nucleus	65.12	66.88
TraesCS6D01G363800.1	Wheat	nucleus	64.97	66.83
GSMUA_Achr10P...	Banana	nucleus	63.27	66.78
TraesCS6A01G379500.1	Wheat	nucleus	64.81	66.67
TraesCS6B01G417700.1	Wheat	nucleus	64.66	66.51
PGSC0003DMT400060183	Potato	nucleus	67.44	66.41
Os02t0810100-00	Rice	plasma membrane	64.81	66.35
Solyc05g054970.2.1	Tomato	extracellular, nucleus	67.28	66.26
Zm00001d018443_P001	Maize	mitochondrion	64.51	66.24
GSMUA_Achr11P...	Banana	nucleus	65.28	65.99
KRH68787	Soybean	nucleus	68.21	64.15
PGSC0003DMT400025371	Potato	cytosol	59.1	63.1
KRH34141	Soybean	plastid	69.14	61.79
Solyc06g036620.1.1	Tomato	cytosol, nucleus, plastid	54.01	55.82
HORVU6Hr1G089010.1	Barley	nucleus	63.12	53.75
Solyc06g036630.1.1	Tomato	endoplasmic reticulum	12.35	52.63
Bra015348.1-P	Field mustard	cytosol	53.09	52.6
PGSC0003DMT400025373	Potato	nucleus	10.19	48.89
KRG97040	Soybean	nucleus	22.69	47.73
Bra016817.1-P	Field mustard	cytosol	35.34	44.55
Bra034461.1-P	Field mustard	cytosol	40.43	44.41
Bra019833.1-P	Field mustard	cytosol	38.73	44.04
Bra015003.1-P	Field mustard	cytosol, plastid	48.15	27.96

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.2	InterPro:ANKRD13	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlantsGene:Bra010013	EnsemblPlants:Bra010013.1	EnsemblPlants:Bra010013.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M4D0L5	PFAM:PF11904	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR12447	PANTHER:PTHR12447:SF17	SUPFAM:SSF48403	UniParc:UPI000253EE68	SEG:seg

Description

AT3G04470 (E=2e-243) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G04780.1); Has 842 Blast hits to 642 proteins in 95 species: Archae - 0; Bacteria - 6; Metazoa - 523; Fungi - 26; Plants - 165; Viruses - 4; Other Eukaryotes - 118 (source: NCBI BLink).

Coordinates

chrA06:+:18627649..18629672

Molecular Weight (calculated)

71933.7 Da

IEP (calculated)

7.499

GRAVY (calculated)

-0.713

Length

648 amino acids

Sequence
(BLAST)

001: MEDYSKYTHS PAHLAVVLHD HAALRRIVMD LPSLAKAGEV TNEAESLEAE SRADAVTAVI DRRDVPGRET PLHLAVRMRD PVSAEILMSA GADWSLQNEN
101: GWSALQEAVC TREEAIAMII ARHYQPLAWA KWCRRLPRIT ASASRIRDFY MEITFHFESS VIPFISRIAP SDTYRIWKRG SNLRADMTLA GFDGFRIQRS
201: DQTFLFLGEG YASDDGKVLL PPGSLIVLSH KEKEVTNALE GAGTQPTEAE VAHEVAHMSQ TNMYRPGIDV TQADLVPQSN WRRQERTETV GSWKAKVYDM
301: MHVMVSVKSR RVPGAMTDEE LFAVDEDRTA NGAENDGFED VLTAEERKQL DSALRMGNSE AAEDEENDVD DHGSGGEANG APLKEKKGWF GWNKKGAKPG
401: HDGGGAEETT AKVKKGSKLA PEEKEKEKGK SQRSSTLSDN NSKEDAGDGK KGKDKGGAKK KKNESEYKKG LRPVLWLTPD FPLKTEELLP LLDILANKVK
501: AVRRLRELLT TKLPTGTFPV KIAIPIIPTV RVLITFTKFE ELQPSEEFST PPTSPVFHDA KSSDSSSSAS WVSWMKGTRG GGQSSDGDSN RYKDSEVDPF
601: MIPSDYKWVD SAEKKRRMKA KKARIRKNRK QGASKPSSSS SRSNQEPE

Best Arabidopsis Sequence Match ( AT3G04470.1 )
(BLAST)

001: MEDYSKYTHS PAHLAVVLRD HAALRRIVSD LPRLAKAGEV TTEAESMESE SRADSVSAVI DRRDVPGRET PLHLAVRLRD PVSAEILMSA GADWSLQNEN
101: GWSALQEAVC TREEAIAMII ARHYQPLAWA KWCRRLPRII ASASRIRDFY MEITFHFESS VIPFIGRIAP SDTYRIWKRG SNLRADMTLA GFDGFKIQRS
201: DQTFLFLGDG YSSEDGKMSL SPGSLIVLSH KEKEMTNALE GAGAQPTDAE VAHEVALMSQ TNMYRPGIDV TQAELVSHLN WRRQERTEMV GNWKAKVYDM
301: LHVMVSVKSR RVPGAMTDEE LFAVDEERTA VTNGAETDGF EDVLTPEERL QLNSALQTGN SDAIEDEECE VTDQQENGAL KDKKGWFGWN KKGSNTEDTK
401: LKKGSKSAPE DGNQKGKSQK SSMVSDHANE DHGDAKKGKE KKKKKKGVAG DEVKRESEYK KGLRPVLWLT PDFPLTTDEL LPLLDILANK VKAVRRLREL
501: LTTKLPLGTF PVKLAIPIIP TVRVVVTFTK FEELQAAEEE FSTPPSSPVF HDAKSSSSEN SSPSWISWMR SGKSSDNDSN RYKDEADPFL IPSDYKWIDS
601: AEKKRRMKAK KAKSRRKKQA ATKAAGASDS GTRSNHVAEE

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9M840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.