Factsheet for Bra034461.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24874	Canola	cytosol	96.78	96.78
CDY07249	Canola	cytosol, plastid	89.15	92.44
AT1G62050.1	Thale cress	cytosol, nucleus, plastid	83.05	78.53
KRH51100	Soybean	cytosol	67.8	70.42
KRH02059	Soybean	cytosol	65.08	68.33
VIT_10s0116g01680.t01	Wine grape	nucleus	66.44	66.89
Solyc02g080610.2.1	Tomato	cytosol	63.56	64.1
Bra019833.1-P	Field mustard	cytosol	56.95	58.95
Bra016817.1-P	Field mustard	cytosol	49.49	56.81
PGSC0003DMT400042418	Potato	cytosol, plastid	43.9	56.18
GSMUA_Achr2P13940_001	Banana	cytosol	47.29	48.69
Bra036125.1-P	Field mustard	nucleus	45.25	43.34
HORVU2Hr1G046900.2	Barley	plastid	43.73	43.07
TraesCS2A01G224100.1	Wheat	plastid	43.73	42.72
TraesCS2B01G274300.1	Wheat	plastid	43.56	42.48
TraesCS2D01G230400.1	Wheat	plastid	43.39	42.38
EER99440	Sorghum	plastid	43.9	42.11
Os07t0512100-01	Rice	plastid	43.56	41.92
Zm00001d021613_P001	Maize	plastid	43.39	41.63
Bra010013.1-P	Field mustard	nucleus	44.41	40.43
Bra015348.1-P	Field mustard	cytosol	43.73	39.45
Bra015003.1-P	Field mustard	cytosol, plastid	43.73	23.12

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.2	InterPro:ANKRD13	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlantsGene:Bra034461	EnsemblPlants:Bra034461.1	EnsemblPlants:Bra034461.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005576	GO:GO:0048046	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
UniProt:M4F068	PFAM:PF11904	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR12447	PANTHER:PTHR12447:SF7
SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI000253E54F	SEG:seg	:	:

Description

AT1G62050 (E=6e-210) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G11740.1); Has 967 Blast hits to 722 proteins in 118 species: Archae - 0; Bacteria - 24; Metazoa - 556; Fungi - 45; Plants - 193; Viruses - 2; Other Eukaryotes - 147 (source: NCBI BLink).

Coordinates

chrScaffold000096:-:372..2454

Molecular Weight (calculated)

66623.1 Da

IEP (calculated)

9.868

GRAVY (calculated)

-0.546

Length

590 amino acids

Sequence
(BLAST)

001: MARPSSASAT AKLPSIKPED YAHSPVHYAV VLGDHAALSR LLSSVPKLGD PEQIRTESDS LSQERIADQI SAVLDRRDVP SRETPLHLAV RLNDLFAAKA
101: ISSAGADISL HNSAGWNPLQ EAFCRRNSEI MKVLLRHHHR LAWCKWRRRL PRLIGVLRRM RDFYMEISFH FESSVIPFVG KIAPSDTYKI WKRDGNLRAD
201: TTLAGFDGLK IQRADQSFLF LGDGDESLDI SPGSLLVLNR DDRKILDAFE SAGAPISDSD IAGFCSQSSL YRPGMDVTKA ELVGRMNWRR QEKMESVGDW
301: KARVYEIQKV TFSFRSRKIV NEGDSSEQVQ PLELDEDDDG FLVAENPSFL APQRSQRRHS SFVNEDRDWI SVGRKSVDVY PSAAPPPRRS VTQFQPPRRS
401: VAVPSTVNPP PSPQIKEKEF VKSLHPSVWL TEQFPLKTEE LLPLLDILAN KVKAVARMRE LLTTKFPPGT FPVKLSIPVV PTVKVVITFT KFVDLPPAER
501: FYTPLSSPRF LSCADQWDDD EEKSDARNST SRPSSWLRRA GLGSQRRTDE EDQQSPDPFA IPIGYKWTSM KNNNKSDSKM KRSKSTKRSK

Best Arabidopsis Sequence Match ( AT1G62050.1 )
(BLAST)

001: MARPSSASAT TAIRPEDYSH SPVHYAVVLG DHGALTRLLS SLPKLGDPEQ IRTESDSLSQ ERVADQISAV LDRRDVPSRE TPLHLAVRLD DLFAARAISS
101: AGGDISLQNA SGWNPLQEAF CRRNSEVMKV LLRHHHRLAW CKWRRRLPRL IAVLRRMRDF YMEISFHFES SVIPFVGKIA PSDTYKIWKR DGNLRADTTL
201: AGFDGLKIQR ADQSFLFLGD GDESLDISPG SLLVLNRDDR KILDAFESAG APISDSDIAG FCSQSSLYRP GMDVTKAELV GRTNWRRQEK MENVGEWKAR
301: VYEIQKVTFS FRSRKIVTGD GSEQVLPLEL DEDDEGFLVA ENPSFLAPPP RSQRRHSSFV KEDRDWISVG RKSVDVYPSA APPPPRQSQS PRRSVSQFQP
401: PRRSMAQVQP PRRSVAQAQP PRRSVALPST VSPVNPPPSP QIKEKEFVKS LHPSVWLTEQ FPLKTEELLP LLDILANKVK AVARMRDLLT TKFPPGTFPV
501: KLSIPVVPTV KVVITFTKFV ELPPAETFYT PLSSPRFLYS ATAGEEDHSD GEKPDARNSI SRPSTWLRLA TGKGSHRRVE EEEQQTPDPF AIPIGYKWTS
601: MSSSNSKSGN SSKMKKSKST KRTK

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q94CF4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.