Factsheet for VIT_10s0116g01680.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51100	Soybean	cytosol	72.35	74.65
KRH02059	Soybean	cytosol	70.14	73.13
VIT_00s1428g00010.t01	Wine grape	cytosol, plastid	25.26	68.52
Solyc02g080610.2.1	Tomato	cytosol	68.26	68.38
CDY24874	Canola	cytosol	67.06	66.61
Bra034461.1-P	Field mustard	cytosol	66.89	66.44
CDY07249	Canola	cytosol, plastid	64.51	66.43
AT1G62050.1	Thale cress	cytosol, nucleus, plastid	67.41	63.3
PGSC0003DMT400042418	Potato	cytosol, plastid	46.42	59.0
GSMUA_Achr2P13940_001	Banana	cytosol	48.63	49.74
HORVU2Hr1G046900.2	Barley	plastid	45.56	44.57
TraesCS2A01G224100.1	Wheat	plastid	45.56	44.21
TraesCS2B01G274300.1	Wheat	plastid	45.56	44.13
TraesCS2D01G230400.1	Wheat	plastid	45.22	43.87
Os07t0512100-01	Rice	plastid	45.73	43.72
Zm00001d021613_P001	Maize	plastid	45.22	43.09
EER99440	Sorghum	plastid	45.05	42.93
VIT_05s0136g00240.t01	Wine grape	cytosol	46.08	41.41
VIT_14s0036g01030.t01	Wine grape	nucleus	46.08	40.91

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100252180	wikigene:100252180	EntrezGene:100853237	wikigene:100853237	MapMan:35.2
InterPro:ANKRD13	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CCB48211	ProteinID:CCB48211.1
UniProt:F6H7L6	EMBL:FN595248	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0048046	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	EntrezGene:LOC100252180	wikigene:LOC100252180	EntrezGene:LOC100853237	wikigene:LOC100853237
PFAM:PF11904	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR12447	PANTHER:PTHR12447:SF7	SUPFAM:SSF48403
UniParc:UPI00015CE140	ArrayExpress:VIT_10s0116g01680	EnsemblPlantsGene:VIT_10s0116g01680	EnsemblPlants:VIT_10s0116g01680.t01	unigene:Vvi.21775	RefSeq:XP_002273433
RefSeq:XP_002273433.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:939070..941387

Molecular Weight (calculated)

65972.9 Da

IEP (calculated)

10.021

GRAVY (calculated)

-0.544

Length

586 amino acids

Sequence
(BLAST)

001: MAKSSTTTTT PFPPIRPEDY RHSPVHYAVA LGDHTTLSRL ASSLPRLADP SQIHTESDSL AQERVADQIS SILDRRDVPF RETPLHLSVR LNDCFAAKTL
101: AAAGADVSLQ NSAGWNPLQE ALCQRSSDIA LVLVRLHHRF AWSKWRRRLP RLVAVLRRMR DFYMEISFHF ESSVIPFVGK IAPSDTYKIW KRDGNLRADT
201: SLAGFDGFKI QRADQSFLFL GDGDRDFDVP PGSLLVLNHD DKKIFDAFEN AGAPMSDSDI AGFCAQTSVY RPGMDVTKAE LVGRTNWRRQ EKTESVGEWK
301: AKVYEIHNVI FSFRSRKIST EIDAGSEQVL PLELDEDAEE GFLVAENFGP PDRRRHSSFV REEREFLSVG RKSVDIPSAA PDRRRLSPAV APPQTKEKEY
401: LKSLRPSVWL TEQFPLKTEE LLPLLDILAN KVKAVRRMRE LLTTKFPPGT FPVKLAIPVV PTVRVVITFT KFVELQSTEQ FYTPLSSPRY FGHGGRGQSE
501: HSDTQHQSFS SSSTSTSTST STSSASAWLR RSNSQANSGS KHHHQRGPGP QQSEPFAMPN GYTWTSIIDD NKSRKLKKSK SMRRSK

Best Arabidopsis Sequence Match ( AT1G62050.1 )
(BLAST)

001: MARPSSASAT TAIRPEDYSH SPVHYAVVLG DHGALTRLLS SLPKLGDPEQ IRTESDSLSQ ERVADQISAV LDRRDVPSRE TPLHLAVRLD DLFAARAISS
101: AGGDISLQNA SGWNPLQEAF CRRNSEVMKV LLRHHHRLAW CKWRRRLPRL IAVLRRMRDF YMEISFHFES SVIPFVGKIA PSDTYKIWKR DGNLRADTTL
201: AGFDGLKIQR ADQSFLFLGD GDESLDISPG SLLVLNRDDR KILDAFESAG APISDSDIAG FCSQSSLYRP GMDVTKAELV GRTNWRRQEK MENVGEWKAR
301: VYEIQKVTFS FRSRKIVTGD GSEQVLPLEL DEDDEGFLVA ENPSFLAPPP RSQRRHSSFV KEDRDWISVG RKSVDVYPSA APPPPRQSQS PRRSVSQFQP
401: PRRSMAQVQP PRRSVAQAQP PRRSVALPST VSPVNPPPSP QIKEKEFVKS LHPSVWLTEQ FPLKTEELLP LLDILANKVK AVARMRDLLT TKFPPGTFPV
501: KLSIPVVPTV KVVITFTKFV ELPPAETFYT PLSSPRFLYS ATAGEEDHSD GEKPDARNSI SRPSTWLRLA TGKGSHRRVE EEEQQTPDPF AIPIGYKWTS
601: MSSSNSKSGN SSKMKKSKST KRTK

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q94CF4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.