Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034461.1-P | Field mustard | cytosol | 78.53 | 83.05 |
| CDY24874 | Canola | cytosol | 77.4 | 81.86 |
| CDY07249 | Canola | cytosol, plastid | 73.08 | 80.14 |
| KRH51100 | Soybean | cytosol | 63.62 | 69.89 |
| KRH02059 | Soybean | cytosol | 61.7 | 68.51 |
| VIT_10s0116g01680.t01 | Wine grape | nucleus | 63.3 | 67.41 |
| Solyc02g080610.2.1 | Tomato | cytosol | 60.58 | 64.62 |
| PGSC0003DMT400042418 | Potato | cytosol, plastid | 41.99 | 56.83 |
| AT1G11740.1 | Thale cress | cytosol | 56.73 | 54.97 |
| GSMUA_Achr2P13940_001 | Banana | cytosol | 44.55 | 48.52 |
| AT3G24210.1 | Thale cress | nucleus | 41.83 | 43.0 |
| HORVU2Hr1G046900.2 | Barley | plastid | 41.19 | 42.9 |
| TraesCS2A01G224100.1 | Wheat | plastid | 41.51 | 42.88 |
| TraesCS2B01G274300.1 | Wheat | plastid | 41.35 | 42.64 |
| Os07t0512100-01 | Rice | plastid | 41.83 | 42.58 |
| TraesCS2D01G230400.1 | Wheat | plastid | 41.19 | 42.55 |
| EER99440 | Sorghum | plastid | 41.67 | 42.28 |
| Zm00001d021613_P001 | Maize | plastid | 41.19 | 41.79 |
| AT3G04470.1 | Thale cress | nucleus | 42.31 | 41.25 |
| AT1G04780.1 | Thale cress | cytosol | 42.47 | 39.91 |
Protein Annotations
| Gene3D:1.25.40.20 | MapMan:35.2 | EntrezGene:842501 | ProteinID:AEE33919.1 | InterPro:ANKRD13 | ArrayExpress:AT1G62050 |
| EnsemblPlantsGene:AT1G62050 | RefSeq:AT1G62050 | TAIR:AT1G62050 | RefSeq:AT1G62050-TAIR-G | EnsemblPlants:AT1G62050.1 | TAIR:AT1G62050.1 |
| EMBL:AY034904 | InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | Unigene:At.10751 | EMBL:BT003006 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0048046 |
| InterPro:IPR002110 | InterPro:IPR020683 | InterPro:IPR036770 | RefSeq:NP_564790.3 | PFAM:PF11904 | PO:PO:0000037 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0025022 | PFscan:PS50088 | PFscan:PS50297 |
| PANTHER:PTHR12447 | PANTHER:PTHR12447:SF7 | UniProt:Q94CF4 | SMART:SM00248 | SUPFAM:SSF48403 | UniParc:UPI000000BE89 |
| SEG:seg | : | : | : | : | : |
Description
Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q94CF4]
Coordinates
chr1:-:22936049..22939024
Molecular Weight (calculated)
69953.2 Da
IEP (calculated)
10.211
GRAVY (calculated)
-0.540
Length
624 amino acids
Sequence
(BLAST)
(BLAST)
001: MARPSSASAT TAIRPEDYSH SPVHYAVVLG DHGALTRLLS SLPKLGDPEQ IRTESDSLSQ ERVADQISAV LDRRDVPSRE TPLHLAVRLD DLFAARAISS
101: AGGDISLQNA SGWNPLQEAF CRRNSEVMKV LLRHHHRLAW CKWRRRLPRL IAVLRRMRDF YMEISFHFES SVIPFVGKIA PSDTYKIWKR DGNLRADTTL
201: AGFDGLKIQR ADQSFLFLGD GDESLDISPG SLLVLNRDDR KILDAFESAG APISDSDIAG FCSQSSLYRP GMDVTKAELV GRTNWRRQEK MENVGEWKAR
301: VYEIQKVTFS FRSRKIVTGD GSEQVLPLEL DEDDEGFLVA ENPSFLAPPP RSQRRHSSFV KEDRDWISVG RKSVDVYPSA APPPPRQSQS PRRSVSQFQP
401: PRRSMAQVQP PRRSVAQAQP PRRSVALPST VSPVNPPPSP QIKEKEFVKS LHPSVWLTEQ FPLKTEELLP LLDILANKVK AVARMRDLLT TKFPPGTFPV
501: KLSIPVVPTV KVVITFTKFV ELPPAETFYT PLSSPRFLYS ATAGEEDHSD GEKPDARNSI SRPSTWLRLA TGKGSHRRVE EEEQQTPDPF AIPIGYKWTS
601: MSSSNSKSGN SSKMKKSKST KRTK
101: AGGDISLQNA SGWNPLQEAF CRRNSEVMKV LLRHHHRLAW CKWRRRLPRL IAVLRRMRDF YMEISFHFES SVIPFVGKIA PSDTYKIWKR DGNLRADTTL
201: AGFDGLKIQR ADQSFLFLGD GDESLDISPG SLLVLNRDDR KILDAFESAG APISDSDIAG FCSQSSLYRP GMDVTKAELV GRTNWRRQEK MENVGEWKAR
301: VYEIQKVTFS FRSRKIVTGD GSEQVLPLEL DEDDEGFLVA ENPSFLAPPP RSQRRHSSFV KEDRDWISVG RKSVDVYPSA APPPPRQSQS PRRSVSQFQP
401: PRRSMAQVQP PRRSVAQAQP PRRSVALPST VSPVNPPPSP QIKEKEFVKS LHPSVWLTEQ FPLKTEELLP LLDILANKVK AVARMRDLLT TKFPPGTFPV
501: KLSIPVVPTV KVVITFTKFV ELPPAETFYT PLSSPRFLYS ATAGEEDHSD GEKPDARNSI SRPSTWLRLA TGKGSHRRVE EEEQQTPDPF AIPIGYKWTS
601: MSSSNSKSGN SSKMKKSKST KRTK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.