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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY18256 Canola cytosol 79.52 81.99
CDX89790 Canola cytosol 77.11 80.76
Bra015348.1-P Field mustard cytosol 79.22 80.43
GSMUA_Achr5P13140_001 Banana mitochondrion 57.68 72.4
VIT_05s0136g00240.t01 Wine grape cytosol 67.17 68.4
GSMUA_Achr4P26640_001 Banana cytosol 61.9 68.39
Solyc09g091560.2.1 Tomato cytosol 65.81 67.02
PGSC0003DMT400076190 Potato cytosol 65.66 66.87
EER98424 Sorghum cytosol 63.55 64.82
GSMUA_Achr1P01140_001 Banana cytosol 53.16 64.53
Zm00001d005442_P001 Maize cytosol 63.4 64.08
Zm00001d019522_P001 Maize cytosol 62.95 63.91
Os07t0436100-01 Rice cytosol 62.8 63.57
AT3G24210.1 Thale cress nucleus 57.98 63.43
TraesCS2D01G236000.1 Wheat cytosol 61.9 62.56
TraesCS2A01G237500.1 Wheat cytosol 61.6 62.44
TraesCSU01G145200.1 Wheat cytosol 60.84 61.68
AT3G04470.1 Thale cress nucleus 52.26 54.22
KRH33464 Soybean cytoskeleton, cytosol, nucleus 43.83 52.24
KRG90235 Soybean nucleus 41.87 50.73
HORVU2Hr1G052030.1 Barley cytosol 7.68 50.49
AT1G62050.1 Thale cress cytosol, nucleus, plastid 39.91 42.47
AT1G11740.1 Thale cress cytosol 36.3 37.42
Protein Annotations
Gene3D:1.25.40.20MapMan:35.2EntrezGene:839414UniProt:A0A178WJQ3ProteinID:AEE27743.1EMBL:AK117997
InterPro:ANKRD13ArrayExpress:AT1G04780EnsemblPlantsGene:AT1G04780RefSeq:AT1G04780TAIR:AT1G04780RefSeq:AT1G04780-TAIR-G
EnsemblPlants:AT1G04780.1TAIR:AT1G04780.1InterPro:Ankyrin_rptInterPro:Ankyrin_rpt-contain_domInterPro:Ankyrin_rpt-contain_sfGO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005886GO:GO:0008150GO:GO:0016020InterPro:IPR002110InterPro:IPR020683InterPro:IPR036770
RefSeq:NP_563716.3ProteinID:OAP17703.1PFAM:PF11904PO:PO:0000005PO:PO:0000013PO:PO:0000037
PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS50088
PFscan:PS50297PANTHER:PTHR12447PANTHER:PTHR12447:SF17UniProt:Q8GXW8SMART:SM00248SUPFAM:SSF48403
UniParc:UPI00000ADE62SEG:seg::::
Description
Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8GXW8]
Coordinates
chr1:-:1340553..1343793
Molecular Weight (calculated)
74363.8 Da
IEP (calculated)
8.438
GRAVY (calculated)
-0.673
Length
664 amino acids
Sequence
(BLAST)
001: MASSTIDVTK YGHSPVHHAV VTRDYAGLKK LLSALPKMRD PSEVQNEAAS VAEETKADSI AAVIDRRDVV NRDTALHLAV KLGDETSAEM LMAAGADWSL
101: QNEHGWSALQ EAICGREERI AMIIVRHYQP LAWAKWCRRL PRLVATMHRM RDFYMEITFH FESSVIPFIS RVAPSDTYKI WKRGANLRAD MTLAGFDGFR
201: IQRSDQTILF LGDGSEDGKV PSGSLLMISH KDKEIMNALD GAGAAASEEE VRQEVAAMSK TSIFRPGIDV TQAVLFPQLT WRRQEKTEMV GQWKAKVYDM
301: HNVVVSIKSR RVPGAMTDEE LFSNTNQEND TESEDLGDIL TEDEKRQLEL ALKLDSPEES SNGESSRISQ KQNSCSFEDR EIPVTDGNGY CKQEKKGWFS
401: GWRKREEGHR RSSVPPRNSL CVDEKVSDLL GDDDSPSRGG RQIKPGRHST VETVVRNENR GLRDSSKAST SEGSGSSKRK EGNKENEYKK GLRPVLWLSE
501: RFPLQTKELL PLLDILANKV KAIRRLRELM TTKLPSGTFP VKVAIPVIPT IRVLVTFTKF EELEAIEDEF VTPPSSPTSS VKNSPREETQ SSSNPSSSWF
601: QWIKTPSQRP STSSSSGGFN IGKAENDQDP FAIPRGYNWI TAEEKKKKVQ EKNKAKKGKS SQNS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.