CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24874	Canola	cytosol	95.25	91.86
Bra034461.1-P	Field mustard	cytosol	92.44	89.15
AT1G62050.1	Thale cress	cytosol, nucleus, plastid	80.14	73.08
KRH51100	Soybean	cytosol	66.96	67.08
KRH02059	Soybean	cytosol	65.2	66.01
VIT_10s0116g01680.t01	Wine grape	nucleus	66.43	64.51
Solyc02g080610.2.1	Tomato	cytosol	63.09	61.37
CDY21008	Canola	cytosol	50.97	56.42
PGSC0003DMT400042418	Potato	cytosol, plastid	45.34	55.97
CDY31210	Canola	nucleus	50.62	55.49
CDX97982	Canola	cytosol, nucleus, peroxisome	59.05	52.58
GSMUA_Achr2P13940_001	Banana	cytosol	47.8	47.47
CDX85149	Canola	nucleus, plastid	46.05	44.33
HORVU2Hr1G046900.2	Barley	plastid	44.64	42.4
TraesCS2A01G224100.1	Wheat	plastid	44.64	42.05
EER99440	Sorghum	plastid	45.34	41.95
CDY45348	Canola	cytosol	42.53	41.87
TraesCS2B01G274300.1	Wheat	plastid	44.46	41.82
Os07t0512100-01	Rice	plastid	44.99	41.76
TraesCS2D01G230400.1	Wheat	plastid	44.29	41.72
Zm00001d021613_P001	Maize	plastid	44.82	41.46
CDY48669	Canola	nucleus	44.29	40.32
CDX86213	Canola	nucleus	44.11	40.1
CDX89790	Canola	cytosol	44.46	39.91
CDY18256	Canola	cytosol	44.46	39.29
CDY57011	Canola	nucleus, plastid	45.87	37.34
CDY00019	Canola	mitochondrion	45.87	37.18
CDY49802	Canola	endoplasmic reticulum, peroxisome, plasma membrane	58.35	34.3
CDX77466	Canola	plastid	44.99	23.86

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.2	InterPro:ANKRD13	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlants:CDY07249	ProteinID:CDY07249	ProteinID:CDY07249.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00124047001	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF11904	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR12447	PANTHER:PTHR12447:SF7	SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI0004EEEA8A
SEG:seg	:	:	:	:	:

Description

BnaC04g19220D

Coordinates

chrLK031976:+:122468..124653

Molecular Weight (calculated)

63974.2 Da

IEP (calculated)

9.490

GRAVY (calculated)

-0.469

Length

569 amino acids

Sequence
(BLAST)

001: MARPSSASAT AKLPSIKPED YAHSPVHYAV VLGDHASLSL LLSSVPKLGD PEQIRTESDS LSQERIADQI SAVLDRRDVP SRETPLHLAV RLNDLLAAKA
101: ISLAGADISL HNAAGWNPLQ EAFCRRNSEI MKVLLSHHHR LAWCKWRRRL PRLIGVLRRM RDFYMEISFH FESSVIPFVG KIAPSDTYKI WKRDGNLRAD
201: TTLAGFDGLK IQRADQSFLF LGDGDESLDI SPGSLLVLNR DDRKILDAFE SAGAPISDSD IAGFCSQSSL YRPGMDVTKA ELVGRMNWRR QEKMESVGDW
301: KARVYEIQKV TFSFRSRKVV NDGESEQVQP LELDEDDDGF LVAENPSFLA PQRKSVDVYP SAAPPPQRSV SQFQPARRSV AVPSTVNPPP SPQIKEKEFV
401: KSLHPSVWLT EQFPLKTEEL LPLLDILANK VKAVARMREL LTTKFPPGTF PVKLSIPVVP TVKVVITFTK FVDLPPAERF YTPLSSPRFL SCADQWDDDE
501: EKSDARNSTS RPSSWLRRTG LGSQRRIEEE EQQSPDPFAI PIGYKWTSMK NNNKSDSKMK RSKSTKRAK

Best Arabidopsis Sequence Match ( AT1G62050.1 )
(BLAST)

001: MARPSSASAT TAIRPEDYSH SPVHYAVVLG DHGALTRLLS SLPKLGDPEQ IRTESDSLSQ ERVADQISAV LDRRDVPSRE TPLHLAVRLD DLFAARAISS
101: AGGDISLQNA SGWNPLQEAF CRRNSEVMKV LLRHHHRLAW CKWRRRLPRL IAVLRRMRDF YMEISFHFES SVIPFVGKIA PSDTYKIWKR DGNLRADTTL
201: AGFDGLKIQR ADQSFLFLGD GDESLDISPG SLLVLNRDDR KILDAFESAG APISDSDIAG FCSQSSLYRP GMDVTKAELV GRTNWRRQEK MENVGEWKAR
301: VYEIQKVTFS FRSRKIVTGD GSEQVLPLEL DEDDEGFLVA ENPSFLAPPP RSQRRHSSFV KEDRDWISVG RKSVDVYPSA APPPPRQSQS PRRSVSQFQP
401: PRRSMAQVQP PRRSVAQAQP PRRSVALPST VSPVNPPPSP QIKEKEFVKS LHPSVWLTEQ FPLKTEELLP LLDILANKVK AVARMRDLLT TKFPPGTFPV
501: KLSIPVVPTV KVVITFTKFV ELPPAETFYT PLSSPRFLYS ATAGEEDHSD GEKPDARNSI SRPSTWLRLA TGKGSHRRVE EEEQQTPDPF AIPIGYKWTS
601: MSSSNSKSGN SSKMKKSKST KRTK

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q94CF4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.