CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97982	Canola	cytosol, nucleus, peroxisome	49.9	75.59
CDY21008	Canola	cytosol	35.95	67.7
CDY31210	Canola	nucleus	36.05	67.24
AT1G11740.1	Thale cress	cytosol	39.15	58.85
CDY07249	Canola	cytosol, plastid	34.3	58.35
CDY24874	Canola	cytosol	34.3	56.27
GSMUA_Achr2P13940_001	Banana	cytosol	27.69	46.77
VIT_00s1428g00010.t01	Wine grape	cytosol, plastid	9.92	44.44
PGSC0003DMT400042419	Potato	extracellular, plasma membrane, plastid	5.99	42.65
CDX85149	Canola	nucleus, plastid	25.0	40.95
CDY48669	Canola	nucleus	25.62	39.68
CDX86213	Canola	nucleus	25.21	38.98
TraesCS2B01G274300.1	Wheat	plastid	23.86	38.18
TraesCS2A01G224100.1	Wheat	plastid	23.76	38.08
CDY18256	Canola	cytosol	25.31	38.04
Os07t0512100-01	Rice	plastid	24.07	38.01
HORVU2Hr1G046900.2	Barley	plastid	23.45	37.9
EER99440	Sorghum	plastid	24.07	37.89
CDX89790	Canola	cytosol	24.79	37.85
Zm00001d021613_P001	Maize	plastid	23.97	37.72
TraesCS2D01G230400.1	Wheat	plastid	23.45	37.58
CDY45348	Canola	cytosol	22.42	37.54
CDY00019	Canola	mitochondrion	26.34	36.32
CDY57011	Canola	nucleus, plastid	26.03	36.05
CDX77466	Canola	plastid	25.72	23.21

Protein Annotations

Gene3D:1.25.40.20	MapMan:18.1.1.1.2	Gene3D:3.40.1180.10	GO:A0A078IIP6	UniProt:A0A078IIP6	InterPro:ANKRD13
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY49802	ProteinID:CDY49802	ProteinID:CDY49802.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016765	EnsemblPlantsGene:GSBRNA2T00093832001	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036424	InterPro:IPR036770	PFAM:PF11904	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR12447
PANTHER:PTHR12447:SF7	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF64005	TMHMM:TMhelix	UniParc:UPI0004EDD43C
InterPro:UPP_synth-like_sf	SEG:seg	:	:	:	:

Description

BnaCnng18150DBnaCnng18150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIP6]

Coordinates

chrLK032859:-:102280..112188

Molecular Weight (calculated)

107778.0 Da

IEP (calculated)

9.310

GRAVY (calculated)

-0.206

Length

968 amino acids

Sequence
(BLAST)

001: MKQMIGSECL VDETTGLTAA TTGNSGQTVA VGAANSLPPS SAVVRLDQMS GPVYTVPVPD MILDYMDFND PMLALSSSIG QIGDFGLDLV WRFIHIVVTL
101: CLIVSGIFEL VESYAISLGL IQKYSSIDIE KLKCLAVVVD IEAARDVSKV IELLRWLTTI GVKQVGVFDS QGLLKKSKDM ILEMVPRSVL LQETGENNIS
201: PDSIALEFIS SFDNKEAVVK AANILLQKYL KSIHPENGEG ENVFTESHLN EALRVVGECV HVPDLLLVYG PVRSHLGFPA WRLRYTEIVH MGSLKYMRYG
301: SLLKAIHKFT GVRQNYGKVI TLFIAGDKMA KSSPVKIPAT SLEDYAHSPF HYAVVLGDHA GLTRLVSSLP KLTEPERIHT ESDSASQERL AEQISAAIDR
401: RDVPLRETPL HLAVRIGDVF AAETISSAGA DITLQNAAGW SPLHEALCRR NAEITETVLR HQRRSAWCKW RRRLPHLIAV LRRMRDFYME ISFHFESSVI
501: PFVGKIAPSD TYRIWKRGGD LRADTSLAGF DRFKIRRASQ SFLFLGDGDE FLDVTSGTLL VLNREEKTIL NAFENANDPI SDGEIAGFCS RTSLYRPGMD
601: VTKAELVEMT NWRRQAKTET IGEWRAKGYE VANVSFSFKS RKVRRQHGCS NVEEKEFQPS SSSRRSRKSV SLPAEGVPVA GSVPRIKEKE FVKSLSPSVW
701: LTEDFPLKTE ELLPLLDILA NKVKAVRRMR ELLTAKFPPG TFPVKLSIPV IPTVKVVVTF SKFVPLRPID QFYTPLSSPR HLSAVVEDQC DVESEETSDI
801: RTSTSSRSSF STSSWRRLNI TGTGKNAQRR LEEEQAQMVD PFSIATGYKW TSNSDNSVSP FSHFHLSCSF NIVSFLFAKK SSTNSRHIRY FDRNRMASEA
901: PSWADQWGNG GIGVMAAKDE TTDGKKDASG KKSGKTKAGF NRAKMVAFIG VNWMKNLVHR KKKDATSS

Best Arabidopsis Sequence Match ( AT1G11740.1 )
(BLAST)

001: MARSSPANIP ATTIDDYAHS PVHYAVVVGD HAGLTRLVSS LPKLTDPEQI HTESDSMSQE RVAEKISTVI DRRDVPFGET PLHLAVRLGD VFAAKTISSA
101: GADITLQNAA GWNSLHEALC RRNSEITEAI LRDHHRSAWC KWRRRLPHLI AVLSRMRDFY MEISFHFESS VIPFVGKIAP SDTYKIWKRG GDLRADTSLA
201: GFDGFKIRRA NQSFLFLSDG DEFLDVSPGT LLVLNRDDKT ILNAFENAKD PISDSDIAGF CGQSSLYRPG MDVTKAKLVE ITNWRRQAKI ETVGEWKAKA
301: YDVENVSFSF KSRKVGKEQG LRLDETRRSV SEPLRPQRRE QRRRSVSLPE AAILVANSSV GRIKEKEIVK SLRPSVWLTD QFPLKTEELL PLLDILANHV
401: KAVRRMRELL TTKFPAGTFP VKLSIPVIPT VKVVMTFSKF VALPPLDEFY TPLSSPKHLL AAMEDQHDVH DDEKLDRRIS SSRPSFSTPS WLRLNINATG
501: KSSRRRLVDE EQVVDPFTIP TGYKWTSNSD NSVYILHIST YLAHPKSVIL SLVFTKKSSK NQRYIRYWDH YKMASEAPSW ADQWGTGGIG VMAAEETTDG
601: KKDVTGKKSG KTKAGINKAK IVVFIGVNWM KNLVQRKKKD STSS

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:F4IAG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.