CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21008	Canola	cytosol	79.58	80.35
CDX97982	Canola	cytosol, nucleus, peroxisome	67.82	55.09
AT1G11740.1	Thale cress	cytosol	65.32	52.64
CDY07249	Canola	cytosol, plastid	55.49	50.62
CDY24874	Canola	cytosol	55.68	48.98
VIT_00s1428g00010.t01	Wine grape	cytosol, plastid	18.69	44.91
PGSC0003DMT400042419	Potato	extracellular, plasma membrane, plastid	11.18	42.65
GSMUA_Achr2P13940_001	Banana	cytosol	44.32	40.14
CDX85149	Canola	nucleus, plastid	43.55	38.24
CDY48669	Canola	nucleus	44.51	36.96
CDX86213	Canola	nucleus	44.12	36.58
CDY49802	Canola	endoplasmic reticulum, peroxisome, plasma membrane	67.24	36.05
CDY45348	Canola	cytosol	38.92	34.95
TraesCS2A01G224100.1	Wheat	plastid	40.27	34.6
HORVU2Hr1G046900.2	Barley	plastid	39.88	34.56
Os07t0512100-01	Rice	plastid	40.46	34.26
TraesCS2B01G274300.1	Wheat	plastid	39.88	34.21
CDX89790	Canola	cytosol	41.62	34.07
TraesCS2D01G230400.1	Wheat	plastid	39.5	33.94
CDY18256	Canola	cytosol	42.0	33.85
Zm00001d021613_P001	Maize	plastid	40.08	33.82
EER99440	Sorghum	plastid	39.69	33.5
CDY00019	Canola	mitochondrion	44.51	32.91
CDY57011	Canola	nucleus, plastid	43.93	32.62
CDX77466	Canola	plastid	42.58	20.6

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.2	UniProt:A0A078GXN1	InterPro:ANKRD13	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY31210	ProteinID:CDY31210	ProteinID:CDY31210.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00047340001	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF11904
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR12447	PANTHER:PTHR12447:SF7	SMART:SM00248	SUPFAM:SSF48403
UniParc:UPI0004EC1249	SEG:seg	:	:	:	:

Description

BnaC08g15050DBnaC08g15050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXN1]

Coordinates

chrLK032269:-:10163..12244

Molecular Weight (calculated)

57948.6 Da

IEP (calculated)

9.296

GRAVY (calculated)

-0.227

Length

519 amino acids

Sequence
(BLAST)

001: MAKPSPVKIP TTTLDDYAHS PFHYAVVLGD HAGLTCLVSS LPKLTEPEQI HTESDSISQE RVAEIISAVI DRRDVPFRET PLHLAVRIGD VFAVKTISSA
101: GADAALRNVA GGNALDEAVC RGNAEITEII LRHQRRSGWC KWRRRLPCLI AVLGRMRDFY MEISISFESF VIPFFGKVVS IPVAPSDTYR IWKQGGDLRA
201: DMSLTGFDRF KIRRANQSFL FLSDDDVSSS PGTLLVLNRE EKTILNAFEN AGETVSEREM DVTKAEVVVM KNWRGKEKVE TVGEWKAKRY EIKNVSFSLK
301: SPKVVVAAGE IEQNSPSLMR QLSCTNVEDK EFEPSSSSSQ RRRKSVSLPV AASVPRIKEK ETVKSLSPSV WLTNDFPLTT EELLPVLDIL AINVEAVRRM
401: TELLTVKFPA GTFPVKMSIP VIPTVKVVIT FSKFVALQSM DQFYTPVSSP SHISAGVEDQ CDVESDTRTS TSRRSFSTPS WLRLKATKKS LQRRLKKEQA
501: QMVDPFAIPA GYKWTSKSD

Best Arabidopsis Sequence Match ( AT1G04780.1 )
(BLAST)

001: MASSTIDVTK YGHSPVHHAV VTRDYAGLKK LLSALPKMRD PSEVQNEAAS VAEETKADSI AAVIDRRDVV NRDTALHLAV KLGDETSAEM LMAAGADWSL
101: QNEHGWSALQ EAICGREERI AMIIVRHYQP LAWAKWCRRL PRLVATMHRM RDFYMEITFH FESSVIPFIS RVAPSDTYKI WKRGANLRAD MTLAGFDGFR
201: IQRSDQTILF LGDGSEDGKV PSGSLLMISH KDKEIMNALD GAGAAASEEE VRQEVAAMSK TSIFRPGIDV TQAVLFPQLT WRRQEKTEMV GQWKAKVYDM
301: HNVVVSIKSR RVPGAMTDEE LFSNTNQEND TESEDLGDIL TEDEKRQLEL ALKLDSPEES SNGESSRISQ KQNSCSFEDR EIPVTDGNGY CKQEKKGWFS
401: GWRKREEGHR RSSVPPRNSL CVDEKVSDLL GDDDSPSRGG RQIKPGRHST VETVVRNENR GLRDSSKAST SEGSGSSKRK EGNKENEYKK GLRPVLWLSE
501: RFPLQTKELL PLLDILANKV KAIRRLRELM TTKLPSGTFP VKVAIPVIPT IRVLVTFTKF EELEAIEDEF VTPPSSPTSS VKNSPREETQ SSSNPSSSWF
601: QWIKTPSQRP STSSSSGGFN IGKAENDQDP FAIPRGYNWI TAEEKKKKVQ EKNKAKKGKS SQNS

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8GXW8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.