Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400054965 | Potato | cytosol | 98.0 | 98.0 |
| Solyc10g081850.1.1 | Tomato | cytosol | 87.0 | 86.14 |
| KRH72168 | Soybean | cytosol | 72.67 | 71.48 |
| KRH32862 | Soybean | cytosol | 71.33 | 69.93 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 61.0 | 66.79 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 72.0 | 66.67 |
| KRH32861 | Soybean | mitochondrion | 73.67 | 66.57 |
| KRH72169 | Soybean | cytosol | 73.67 | 65.97 |
| CDY70958 | Canola | cytosol | 72.0 | 64.86 |
| Bra001422.1-P | Field mustard | cytosol | 72.0 | 64.86 |
| CDX73851 | Canola | cytosol | 72.0 | 64.67 |
| CDY01061 | Canola | cytosol, plastid | 71.67 | 64.18 |
| CDY08492 | Canola | cytosol | 71.0 | 62.83 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 72.33 | 62.72 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 67.67 | 62.46 |
| EER93336 | Sorghum | cytosol | 62.33 | 60.91 |
| Zm00001d034365_P001 | Maize | plasma membrane | 60.33 | 59.15 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 60.33 | 58.2 |
| KRH68016 | Soybean | cytosol | 56.33 | 57.48 |
| Bra033436.1-P | Field mustard | cytosol | 65.33 | 57.31 |
| KRG96271 | Soybean | cytosol, golgi, mitochondrion | 57.33 | 57.14 |
| CDY23212 | Canola | cytosol | 65.33 | 57.14 |
| AT3G52400.1 | Thale cress | cytosol | 64.67 | 56.89 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 60.0 | 56.78 |
| Solyc12g005580.1.1 | Tomato | cytosol | 58.67 | 56.77 |
| Os03t0787000-01 | Rice | plasma membrane | 62.0 | 56.36 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 59.67 | 55.94 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 57.33 | 55.84 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 59.67 | 55.76 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 62.0 | 55.69 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 62.0 | 55.36 |
| Solyc01g056810.2.1 | Tomato | cytosol | 43.67 | 51.78 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 43.67 | 51.37 |
| Solyc06g053760.2.1 | Tomato | cytosol | 49.33 | 47.59 |
| Zm00001d013115_P001 | Maize | cytosol | 22.67 | 46.58 |
| Solyc10g081580.1.1 | Tomato | cytosol, plastid | 47.67 | 46.13 |
| Solyc07g052470.2.1 | Tomato | cytosol | 46.0 | 45.25 |
| CDX95336 | Canola | cytosol | 15.0 | 42.86 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 41.0 | 42.12 |
| Solyc02g085090.1.1 | Tomato | cytosol | 40.33 | 40.47 |
| Solyc01g109750.2.1 | Tomato | cytosol | 36.67 | 39.29 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 16.67 | 32.26 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0000149 | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006887 | GO:GO:0006906 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048278 | InterPro:IPR000727 | UniProt:K4ASR1 | PFAM:PF00804 |
| PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | EnsemblPlantsGene:Solyc01g006950.2 | EnsemblPlants:Solyc01g006950.2.1 | InterPro:Syntaxin/epimorphin_CS |
| InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI00027626E3 | SEG:seg | : |
Description
No Description!
Coordinates
chr1:-:1516340..1518150
Molecular Weight (calculated)
34234.7 Da
IEP (calculated)
7.150
GRAVY (calculated)
-0.644
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSGSFS RYRENDHDQD SHGIEMGDTG GVNLDKFFED VEAIKDELKN LEKIYAQLQS SNEKSKTLHN AKAVKDLRSK MDDDVSLALK KAKFIKVRLE
101: ALDRSNASNR SLPGCGPGSS SDRTRTSVVN GLRKKLQESM NQFNELRQKM ASEYRETVQR RYYTVTGENP DEAVLDTLIS TGQSETFLQK AIQEQGRGQV
201: MDTIMEIQER HEAVKEIERN LKELHQVFLD MAVLVESQGE QLDDIESQVN RANSFVRGGA QQLQVARKHQ KNTRKWTCFA IILLLIIILI VVLSIQPWKK
101: ALDRSNASNR SLPGCGPGSS SDRTRTSVVN GLRKKLQESM NQFNELRQKM ASEYRETVQR RYYTVTGENP DEAVLDTLIS TGQSETFLQK AIQEQGRGQV
201: MDTIMEIQER HEAVKEIERN LKELHQVFLD MAVLVESQGE QLDDIESQVN RANSFVRGGA QQLQVARKHQ KNTRKWTCFA IILLLIIILI VVLSIQPWKK
001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
Arabidopsis Description
SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.