Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001933 | Potato | cytosol | 97.5 | 93.17 |
| VIT_03s0038g04720.t01 | Wine grape | cytosol | 66.07 | 61.87 |
| Solyc02g085090.1.1 | Tomato | cytosol | 55.71 | 52.17 |
| GSMUA_Achr10P... | Banana | cytosol | 47.14 | 48.53 |
| Solyc06g053760.2.1 | Tomato | cytosol | 46.07 | 41.48 |
| Solyc01g006950.2.1 | Tomato | nucleus | 39.29 | 36.67 |
| Solyc12g005580.1.1 | Tomato | cytosol | 37.86 | 34.19 |
| Solyc10g081850.1.1 | Tomato | cytosol | 36.43 | 33.66 |
| Solyc07g052470.2.1 | Tomato | cytosol | 33.93 | 31.15 |
| Solyc01g056810.2.1 | Tomato | cytosol | 27.86 | 30.83 |
| Solyc10g081580.1.1 | Tomato | cytosol, plastid | 33.21 | 30.0 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0000149 | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006887 | GO:GO:0006906 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048278 | InterPro:IPR000727 | UniProt:K4B3I8 | PFAM:PF00804 |
| PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF128 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | EnsemblPlantsGene:Solyc01g109750.2 | EnsemblPlants:Solyc01g109750.2.1 | InterPro:Syntaxin/epimorphin_CS |
| InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0002768BA2 | SEG:seg | : |
Description
No Description!
Coordinates
chr1:-:96617598..96618648
Molecular Weight (calculated)
31936.9 Da
IEP (calculated)
6.538
GRAVY (calculated)
-0.395
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKSFLSYVE LKKQAMMDVE AGPDIEMGQL DPTDERNLSK FFEEVAVIKS DMEEINNLLV NLQDLNRKTK SAPSAKILQG HRDQINSDII TVLRKAKMIK
101: TRLELLDKSN LDNRGVSGSP VDRTRISVTN GLRIKLRDMM NDFQCLRENI VAEHKEGLRK QYSNANGKEP SEEAIEKMMQ ERVIEKGVVE NQDRHEAVKE
201: IQKSLVELHQ VFLDMAVMVE TQGDQMNNIE QNVVNAGGYV NGGMKELDRA NRMKRTRTWA CWIGALVLVF LLICLIAILF
101: TRLELLDKSN LDNRGVSGSP VDRTRISVTN GLRIKLRDMM NDFQCLRENI VAEHKEGLRK QYSNANGKEP SEEAIEKMMQ ERVIEKGVVE NQDRHEAVKE
201: IQKSLVELHQ VFLDMAVMVE TQGDQMNNIE QNVVNAGGYV NGGMKELDRA NRMKRTRTWA CWIGALVLVF LLICLIAILF
001: MNDLMTKSFL SYVELKKQAR TDMESDRDLE KGEDFNFDFS PADEENLSGF FQEIETIKTL IEEITHLLLD LQNLNEETKS THSTKILRGL RDRMESNIVT
101: ISRKANTVKT LIETLEKRNV ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE PSNEDMEKMI SGSGSCSDLV
201: KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS
301: MLASR
101: ISRKANTVKT LIETLEKRNV ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE PSNEDMEKMI SGSGSCSDLV
201: KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS
301: MLASR
Arabidopsis Description
SYP112SYP112 [Source:UniProtKB/TrEMBL;Acc:A0A178VPA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.