Factsheet for PGSC0003DMT400001933

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g109750.2.1	Tomato	cytosol	93.17	97.5
VIT_03s0038g04720.t01	Wine grape	cytosol	66.89	65.55
PGSC0003DMT400009282	Potato	cytosol, mitochondrion	56.31	55.18
GSMUA_Achr10P...	Banana	cytosol	47.44	51.1
PGSC0003DMT400041982	Potato	cytosol	44.71	42.12
PGSC0003DMT400054965	Potato	cytosol	38.91	38.0
PGSC0003DMT400072325	Potato	cytosol	36.18	35.1
PGSC0003DMT400035739	Potato	cytosol	36.86	34.84
PGSC0003DMT400055777	Potato	cytosol	36.52	34.41
PGSC0003DMT400072284	Potato	cytosol	33.11	31.29
PGSC0003DMT400065519	Potato	cytosol	33.11	31.09

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	EntrezGene:102590179	MapMan:22.7.1.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:IPR000727	UniProt:M0ZJC7	PFAM:PF00804
PFAM:PF05739	EnsemblPlantsGene:PGSC0003DMG400000733	PGSC:PGSC0003DMG400000733	EnsemblPlants:PGSC0003DMT400001933	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF128	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661
InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000295B545	RefSeq:XP_006365116.1
SEG:seg	:	:	:	:	:

Description

Syntaxin [Source:PGSC_GENE;Acc:PGSC0003DMG400000733]

Coordinates

chr1:-:86072484..86074144

Molecular Weight (calculated)

33356.5 Da

IEP (calculated)

5.055

GRAVY (calculated)

-0.361

Length

293 amino acids

Sequence
(BLAST)

001: MNDLMTKSFL SYVELKKQAM MDLEAGPDIE MGQLDPTDER NLSKFFEEVA VIKSDMEEIN NLLVNLQDLN LKTKSAPSAK ILQGLRDQIN SDIITVLRKA
101: KIIKTRLELL DKSNLDNRGV SAAYKEGSPV DRTRISVTNG LRIKLRDMMN DFQCLRENIV AEHKEGLRKQ YSNANGKEPS EEAIEKMMEE RVFEGRVEKG
201: VVENQDRDEA VKEIQKSLVE LHQVFLDMAV MVETQGDQMN NIEQNVVNAG GYVNGGMKEL DRANRMKRTR TWACWIGALV LVFLLICLIA ILF

Best Arabidopsis Sequence Match ( AT2G18260.1 )
(BLAST)

001: MNDLMTKSFL SYVELKKQAR TDMESDRDLE KGEDFNFDFS PADEENLSGF FQEIETIKTL IEEITHLLLD LQNLNEETKS THSTKILRGL RDRMESNIVT
101: ISRKANTVKT LIETLEKRNV ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE PSNEDMEKMI SGSGSCSDLV
201: KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS
301: MLASR

Arabidopsis Description

SYP112SYP112 [Source:UniProtKB/TrEMBL;Acc:A0A178VPA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.