Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g005580.1.1 | Tomato | cytosol | 97.42 | 97.42 |
| PGSC0003DMT400055777 | Potato | cytosol | 83.55 | 83.28 |
| KRH10761 | Soybean | cytosol | 76.77 | 78.29 |
| KRH41917 | Soybean | cytosol | 76.13 | 77.63 |
| KRH21567 | Soybean | cytosol | 76.13 | 77.63 |
| Bra031761.1-P | Field mustard | cytosol | 40.32 | 75.76 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 73.87 | 75.08 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 74.19 | 74.68 |
| AT1G61290.2 | Thale cress | cytosol | 72.58 | 74.26 |
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 24.84 | 74.04 |
| Bra016846.1-P | Field mustard | cytosol | 70.97 | 73.83 |
| CDY70107 | Canola | cytosol | 70.97 | 73.83 |
| AT1G11250.1 | Thale cress | cytosol | 70.97 | 73.83 |
| CDY20986 | Canola | cytosol | 70.97 | 73.83 |
| CDY34656 | Canola | cytosol | 70.65 | 73.49 |
| Bra019872.1-P | Field mustard | cytosol | 70.65 | 73.49 |
| CDX97943 | Canola | cytosol | 70.65 | 73.49 |
| CDY19350 | Canola | cytosol | 70.65 | 73.49 |
| CDY34843 | Canola | cytosol | 70.65 | 73.49 |
| Bra031759.1-P | Field mustard | cytosol | 70.0 | 72.82 |
| Zm00001d046482_P001 | Maize | cytosol | 68.06 | 68.28 |
| Zm00001d036931_P001 | Maize | cytosol | 67.42 | 67.64 |
| EER89986 | Sorghum | cytosol | 67.42 | 67.64 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 54.19 | 66.14 |
| TraesCS7B01G260100.1 | Wheat | cytosol | 64.84 | 65.69 |
| GSMUA_Achr10P... | Banana | cytosol | 59.03 | 65.59 |
| TraesCS6D01G169800.1 | Wheat | cytosol | 64.19 | 65.25 |
| TraesCS6B01G211000.1 | Wheat | cytosol | 63.87 | 64.92 |
| TraesCS7A01G368400.1 | Wheat | cytosol | 63.87 | 64.71 |
| TraesCS7D01G354500.1 | Wheat | cytosol | 63.55 | 64.38 |
| EES06503 | Sorghum | cytosol | 64.52 | 63.49 |
| Os02t0209900-01 | Rice | cytosol | 63.55 | 63.34 |
| Zm00001d053607_P001 | Maize | cytosol | 62.58 | 61.98 |
| PGSC0003DMT400054965 | Potato | cytosol | 55.48 | 57.33 |
| PGSC0003DMT400072325 | Potato | cytosol | 54.19 | 55.63 |
| TraesCS6A01G182200.1 | Wheat | cytosol | 64.52 | 52.91 |
| PGSC0003DMT400041982 | Potato | cytosol | 47.74 | 47.59 |
| PGSC0003DMT400072284 | Potato | cytosol | 43.87 | 43.87 |
| PGSC0003DMT400065519 | Potato | cytosol | 40.0 | 39.74 |
| PGSC0003DMT400009282 | Potato | cytosol, mitochondrion | 37.74 | 39.13 |
| PGSC0003DMT400001933 | Potato | cytosol | 34.84 | 36.86 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 35.16 | 34.6 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 35.16 | 34.6 |
Protein Annotations
| Gene3D:1.20.58.70 | EntrezGene:102583752 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0061025 | InterPro:IPR000727 | UniProt:M1B2R5 | PFAM:PF00804 | PFAM:PF05739 |
| EnsemblPlantsGene:PGSC0003DMG400013748 | PGSC:PGSC0003DMG400013748 | EnsemblPlants:PGSC0003DMT400035739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF198 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS |
| InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0002966752 | RefSeq:XP_006351945.1 | SEG:seg |
Description
Syntaxin [Source:PGSC_GENE;Acc:PGSC0003DMG400013748]
Coordinates
chr12:+:6938054..6939561
Molecular Weight (calculated)
35115.2 Da
IEP (calculated)
6.642
GRAVY (calculated)
-0.441
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSNSFK KYQDLKKQVV VDDLEGGQVG QPGTESIDLA KFFEDVENVK EDMKDVEKFH KKLQESNEES KLVHNAKTVK EIRSRMDSDV SQVLKRVKMI
101: KGKLEALERS NAAHRKISGC GPGSSADRTR TSVVSGLGKK LKVLMDDFQA LRTRMNDEYK ETVARRYFTV TGEKAGDELI ENLISSGESE SFLQKAIQEQ
201: GRGQIMDTIS EIQERHDAVK EIEKNLIELH QIFLDMAALV EAQGQQLNDI ESHVAHASSF VRRGTDQLQE AREIQKSSRK CACFAVFLII LLIILLTFPL
301: WWPLVASKLL
101: KGKLEALERS NAAHRKISGC GPGSSADRTR TSVVSGLGKK LKVLMDDFQA LRTRMNDEYK ETVARRYFTV TGEKAGDELI ENLISSGESE SFLQKAIQEQ
201: GRGQIMDTIS EIQERHDAVK EIEKNLIELH QIFLDMAALV EAQGQQLNDI ESHVAHASSF VRRGTDQLQE AREIQKSSRK CACFAVFLII LLIILLTFPL
301: WWPLVASKLL
001: MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
Arabidopsis Description
SYP124Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.