Factsheet for PGSC0003DMT400065519

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g052470.2.1	Tomato	cytosol	90.06	92.13
VIT_12s0059g02340.t01	Wine grape	cytosol	72.44	74.34
KRH22542	Soybean	endoplasmic reticulum, extracellular, mitochondrion	70.83	72.22
KRH26811	Soybean	cytosol	70.51	71.9
PGSC0003DMT400072284	Potato	cytosol	62.82	63.23
TraesCS2D01G224100.1	Wheat	cytosol	60.26	62.05
TraesCS2B01G244700.1	Wheat	cytosol	60.26	62.05
EER97312	Sorghum	cytosol	60.58	61.97
HORVU2Hr1G045350.3	Barley	cytosol	57.69	61.43
TraesCS2A01G219200.1	Wheat	cytosol	59.62	61.39
Os07t0528900-00	Rice	cytosol, extracellular, plasma membrane	19.55	54.95
GSMUA_Achr9P24850_001	Banana	cytosol	49.04	54.64
Zm00001d021664_P001	Maize	cytosol	54.49	47.75
PGSC0003DMT400054965	Potato	cytosol	43.91	45.67
PGSC0003DMT400072325	Potato	cytosol	43.91	45.36
PGSC0003DMT400041982	Potato	cytosol	44.23	44.37
PGSC0003DMT400035739	Potato	cytosol	39.74	40.0
PGSC0003DMT400055777	Potato	cytosol	39.42	39.55
PGSC0003DMT400009282	Potato	cytosol, mitochondrion	33.01	34.45
PGSC0003DMT400001933	Potato	cytosol	31.09	33.11
HORVU2Hr1G043130.15	Barley	cytosol	25.96	25.8
TraesCS2B01G238200.2	Wheat	cytosol	25.0	25.32
TraesCS2A01G213400.1	Wheat	cytosol	21.47	25.0
TraesCS2D01G219400.1	Wheat	cytosol	25.32	22.77

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	EntrezGene:102581413	MapMan:22.7.1.1	ncoils:Coil	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR000727
UniProt:M1CE56	PFAM:PF00804	PFAM:PF05739	EnsemblPlantsGene:PGSC0003DMG400025493	PGSC:PGSC0003DMG400025493	EnsemblPlants:PGSC0003DMT400065519
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF153	SMART:SM00397	SMART:SM00503	InterPro:SNARE
SUPFAM:SSF47661	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000296D188	RefSeq:XP_006367275.1
SEG:seg	:	:	:	:	:

Description

Syntaxin [Source:PGSC_GENE;Acc:PGSC0003DMG400025493]

Coordinates

chr7:+:47094853..47099741

Molecular Weight (calculated)

35156.3 Da

IEP (calculated)

9.326

GRAVY (calculated)

-0.523

Length

312 amino acids

Sequence
(BLAST)

001: MNDLLADSSF IAGKDNASKE SDIEMGNRFT RSQSDSGIDS FNKQIQEIEK QVDKLSGFLK TLKDANEETK SVTKASAMKA IRKRMEKDID EVGKIARNVK
101: AKIEATNKEN LANRQKPGCG KGTSVDRSRT NMTNALTKKF RDVMTEFQTL RQRIDNEYRE VVERRVITVT GTRPDEETIN NLIETGNSEQ IFQNAIQGMG
201: RGQVLSTVEE IQERHDAVKE IERKLLDLHQ IYLDMAVLVE AQGDLLDNIE TQVTNTIDYV QSGAIALQTA KKLQKKSRKC MFIGIIIFLI IVGIIVLPFI
301: LKSQPWKSNK GA

Best Arabidopsis Sequence Match ( AT5G08080.1 )
(BLAST)

001: MNDLLKGSFE LPRGQSSREG DVELGEQQGG DQGLEDFFKK VQVIDKQYDK LDKLLKKLQA SHEESKSVTK APAMKAIKKT MEKDVDEVGS IARFIKGKLE
101: ELDRENLANR QKPGCAKGSG VDRSRTATTL SLKKKLKDKM AEFQVLRENI QQEYRDVVDR RVYTVTGERA DEDTIDELIE TGNSEQIFQK AIQEQGRGQV
201: MDTLAEIQER HDAVRDLEKK LLDLQQIFLD MAVLVDAQGE MLDNIESQVS SAVDHVQSGN TALQRAKSLQ KNSRKWMCIA IIILLIVVAV IVVGVLKPWK
301: NKSA

Arabidopsis Description

SYP132Syntaxin of plants 132 [Source:UniProtKB/TrEMBL;Acc:F4K9K2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.