Factsheet for PGSC0003DMT400072284

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g081580.1.1	Tomato	cytosol, plastid	98.71	98.71
VIT_08s0032g00440.t01	Wine grape	cytosol	81.61	82.41
KRH08507	Soybean	cytosol	79.35	79.87
Bra005968.1-P	Field mustard	cytosol	77.74	79.28
Bra009318.1-P	Field mustard	cytosol	76.77	78.55
Bra028672.1-P	Field mustard	cytosol	76.45	78.22
KRH70169	Soybean	cytosol	36.45	76.87
CDY51747	Canola	cytosol	32.58	74.81
CDY21160	Canola	cytosol	31.94	74.44
AT5G08080.3	Thale cress	cytosol	75.48	74.29
CDY50666	Canola	cytosol	31.94	73.33
CDY29963	Canola	cytosol	70.97	70.97
CDY51748	Canola	cytosol	40.0	70.06
CDY50665	Canola	cytosol	39.03	69.54
TraesCS2D01G248900.1	Wheat	cytosol	67.42	69.21
TraesCS2B01G263700.1	Wheat	cytosol	67.42	69.21
GSMUA_Achr2P17410_001	Banana	cytosol	65.48	68.81
EER98026	Sorghum	cytosol	67.1	68.65
Zm00001d007902_P001	Maize	mitochondrion, plasma membrane	66.77	68.09
GSMUA_Achr2P01540_001	Banana	cytosol	65.16	67.79
CDY21161	Canola	cytosol	38.71	67.04
TraesCS7B01G394300.1	Wheat	cytosol	65.16	66.45
TraesCS7A01G481800.1	Wheat	cytosol	64.84	66.12
HORVU6Hr1G095330.1	Barley	cytosol	63.23	65.12
Os06t0168500-01	Rice	plasma membrane	63.23	64.26
TraesCS5B01G034800.1	Wheat	cytosol	62.58	64.03
HORVU5Hr1G026120.1	Barley	cytosol	62.58	63.4
PGSC0003DMT400065519	Potato	cytosol	63.23	62.82
TraesCS5B01G035600.1	Wheat	cytosol	62.26	62.46
TraesCS2A01G246600.1	Wheat	cytosol	66.77	62.16
TraesCS5B01G102700.1	Wheat	cytosol	61.29	62.09
TraesCS5D01G109500.1	Wheat	cytosol	60.97	61.76
TraesCS5A01G096800.1	Wheat	cytosol	60.97	61.76
EES16084	Sorghum	cytosol	60.97	61.56
HORVU2Hr1G057350.2	Barley	cytosol	64.84	61.09
Zm00001d041716_P002	Maize	cytosol	61.94	60.57
GSMUA_Achr7P16680_001	Banana	plasma membrane	72.58	60.16
Zm00001d018867_P002	Maize	plastid	66.77	52.94
PGSC0003DMT400054965	Potato	cytosol	45.81	47.33
PGSC0003DMT400072325	Potato	cytosol	45.16	46.36
PGSC0003DMT400035739	Potato	cytosol	43.87	43.87
PGSC0003DMT400055777	Potato	cytosol	43.55	43.41
PGSC0003DMT400041982	Potato	cytosol	40.0	39.87
PGSC0003DMT400001933	Potato	cytosol	31.29	33.11
PGSC0003DMT400009282	Potato	cytosol, mitochondrion	31.61	32.78
TraesCS1A01G088800.1	Wheat	cytosol	30.0	32.4
TraesCS5A01G240200.3	Wheat	mitochondrion	21.94	30.77

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	EntrezGene:102594156	MapMan:22.7.1.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005802	GO:GO:0005886	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009504	GO:GO:0009506	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:IPR000727
UniProt:M1CQ03	PFAM:PF00804	PFAM:PF05739	EnsemblPlantsGene:PGSC0003DMG400028128	PGSC:PGSC0003DMG400028128	EnsemblPlants:PGSC0003DMT400072284
ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF153	SMART:SM00397	SMART:SM00503
InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI00029672AB	RefSeq:XP_006339193.1	SEG:seg	:	:	:

Description

Syntaxin [Source:PGSC_GENE;Acc:PGSC0003DMG400028128]

Coordinates

chr10:-:56395067..56403742

Molecular Weight (calculated)

35242.3 Da

IEP (calculated)

6.808

GRAVY (calculated)

-0.612

Length

310 amino acids

Sequence
(BLAST)

001: MNDLLNDDDN FDAPRHQNNR NGDVEMGTQI PMNSGELGLD DFFKKVQQIE KQYERLNDLL QKLQDAHEES KAVTKASAMK AIKQRMEKDV DEVGKIARVI
101: KSKIEELDKE NLANRNKPGC GKGSAVDRSR TATTVSLKKK FKDKMAEFQT LRENIHHEYR EVVERRVFTV TGNRADEETI DRLIETGDSE QIFQKAIQQQ
201: GRGQIMGTLA EIQERHDAVR ELERKLLELQ QIFLDIAVLV DAQGDMLDNI ESQVSTAVDH VQSGTTALQK AKKLQKNSRK WMCFAIMILL IIVAIIVVGV
301: LKPWQSNKGA

Best Arabidopsis Sequence Match ( AT3G03800.1 )
(BLAST)

001: MNDLLKGSLE FSRDRSNRSD IESGHGPGNS GDLGLSGFFK KVQEIEKQYE KLDKHLNKLQ GAHEETKAVT KAPAMKSIKQ RMERDVDEVG RISRFIKGKI
101: EELDRENLEN RTKPGCGKGT GVDRTRTATT IAVKKKFKDK ISEFQTLRQN IQQEYREVVE RRVFTVTGQR ADEETVDRLI ETGDSEQIFQ KAIREQGRGQ
201: IMDTLAEIQE RHDAVRDLEK KLLDLQQVFL DMAVLVDAQG EMLDNIENMV SSAVDHVQSG NNQLTKAVKS QKSSRKWMCI AILILLIIII ITVISVLKPW
301: TQKNGA

Arabidopsis Description

SYP131Syntaxin of plants 131 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.