CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007902_P001	Maize	mitochondrion, plasma membrane	98.02	97.7
TraesCS2D01G248900.1	Wheat	cytosol	93.4	93.71
TraesCS2B01G263700.1	Wheat	cytosol	93.4	93.71
TraesCS7B01G394300.1	Wheat	cytosol	86.8	86.51
TraesCS7A01G481800.1	Wheat	cytosol	86.47	86.18
HORVU6Hr1G095330.1	Barley	cytosol	85.15	85.71
TraesCS2A01G246600.1	Wheat	cytosol	92.08	83.78
HORVU2Hr1G057350.2	Barley	cytosol	88.78	81.76
TraesCS5B01G034800.1	Wheat	cytosol	79.87	79.87
TraesCS5B01G035600.1	Wheat	cytosol	78.88	77.35
Zm00001d018867_P002	Maize	plastid	97.36	75.45
Solyc01g056810.2.1	Tomato	cytosol	59.41	71.15
VIT_08s0032g00440.t01	Wine grape	cytosol	68.98	68.08
Bra005968.1-P	Field mustard	cytosol	67.99	67.76
Bra009318.1-P	Field mustard	cytosol	67.66	67.66
KRH08507	Soybean	cytosol	68.65	67.53
Solyc10g081580.1.1	Tomato	cytosol, plastid	68.98	67.42
PGSC0003DMT400072284	Potato	cytosol	68.65	67.1
Bra028672.1-P	Field mustard	cytosol	66.34	66.34
GSMUA_Achr2P01540_001	Banana	cytosol	63.04	64.09
AT5G08080.3	Thale cress	cytosol	66.01	63.49
CDY21160	Canola	cytosol	27.39	62.41
EER97312	Sorghum	cytosol	61.72	61.31
KRH70169	Soybean	cytosol	29.7	61.22
AT3G03800.1	Thale cress	cytosol	61.39	60.78
CDY51747	Canola	cytosol	27.06	60.74
EES16084	Sorghum	cytosol	60.73	59.93
CDY50666	Canola	cytosol	26.4	59.26
CDY29963	Canola	cytosol	60.07	58.71
Bra036431.1-P	Field mustard	cytosol	52.48	57.19
Bra031972.1-P	Field mustard	cytosol	52.81	57.14
CDY51748	Canola	cytosol	33.33	57.06
CDY50665	Canola	cytosol	32.67	56.9
CDY21161	Canola	cytosol	33.33	56.42
EER89986	Sorghum	cytosol	42.24	41.42
EER93336	Sorghum	cytosol	41.91	41.37
EES06503	Sorghum	cytosol	40.92	39.37
KXG37622	Sorghum	cytosol	37.29	36.22
TraesCS1A01G088800.1	Wheat	cytosol	33.99	35.89
TraesCS5A01G240200.3	Wheat	mitochondrion	24.75	33.94
OQU78880	Sorghum	cytosol	27.06	26.62

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.1	EntrezGene:8081160	UniProt:C5XAA1	ncoils:Coil
EnsemblPlants:EER98026	ProteinID:EER98026	ProteinID:EER98026.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	GO:GO:0048278	InterPro:IPR000727	PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF153	SMART:SM00397	SMART:SM00503	InterPro:SNARE
EnsemblPlantsGene:SORBI_3002G043300	SUPFAM:SSF47661	unigene:Sbi.13265	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI0001A841C6	RefSeq:XP_002461505.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:4118297..4122803

Molecular Weight (calculated)

34422.5 Da

IEP (calculated)

7.627

GRAVY (calculated)

-0.559

Length

303 amino acids

Sequence
(BLAST)

001: MNNLLTDSFE LPRRDSSRDA DIEMGMHQAD ASDNLKDFLK KVDAIESLIA KLTNLLNKLQ TANEESKAVT KASSMKAIKQ RMEKDIDEVG KIARQAKTKV
101: DELEKDNLLN RQKPGCGKGS AVDRSREQTT GAVKKKLKER MDDFQTLREA IRQEYREVVE RRVFTVTGNR PDEETIDDLI ETGKSEQIFK DAIQHQGRGQ
201: ILDTVAEIQE RHDAVRDLER KLLELQQIFM DMAVLVEAQG DMINNIETHV SNATNHIQQG VTALQSAKKL QKNSRKWMCY AIILLLVIVV VIVVAVIQPW
301: KKG

Best Arabidopsis Sequence Match ( AT5G08080.1 )
(BLAST)

001: MNDLLKGSFE LPRGQSSREG DVELGEQQGG DQGLEDFFKK VQVIDKQYDK LDKLLKKLQA SHEESKSVTK APAMKAIKKT MEKDVDEVGS IARFIKGKLE
101: ELDRENLANR QKPGCAKGSG VDRSRTATTL SLKKKLKDKM AEFQVLRENI QQEYRDVVDR RVYTVTGERA DEDTIDELIE TGNSEQIFQK AIQEQGRGQV
201: MDTLAEIQER HDAVRDLEKK LLDLQQIFLD MAVLVDAQGE MLDNIESQVS SAVDHVQSGN TALQRAKSLQ KNSRKWMCIA IIILLIVVAV IVVGVLKPWK
301: NKSA

Arabidopsis Description

SYP132Syntaxin of plants 132 [Source:UniProtKB/TrEMBL;Acc:F4K9K2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.