Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- golgi 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034365_P001 | Maize | plasma membrane | 93.81 | 94.12 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 89.25 | 86.44 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 89.9 | 86.25 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 89.9 | 85.98 |
| Os03t0787000-01 | Rice | plasma membrane | 89.25 | 83.03 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 70.03 | 78.47 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 60.59 | 72.94 |
| Zm00001d013115_P001 | Maize | cytosol | 34.2 | 71.92 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 72.64 | 71.7 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 59.93 | 63.01 |
| PGSC0003DMT400072325 | Potato | cytosol | 61.89 | 62.91 |
| Solyc10g081850.1.1 | Tomato | cytosol | 61.89 | 62.71 |
| Solyc01g006950.2.1 | Tomato | nucleus | 60.91 | 62.33 |
| PGSC0003DMT400054965 | Potato | cytosol | 59.93 | 61.33 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 62.22 | 58.95 |
| KRH72168 | Soybean | cytosol | 57.98 | 58.36 |
| KRH32862 | Soybean | cytosol | 57.65 | 57.84 |
| CDY70958 | Canola | cytosol | 61.24 | 56.46 |
| Bra001422.1-P | Field mustard | cytosol | 61.24 | 56.46 |
| CDX73851 | Canola | cytosol | 61.24 | 56.29 |
| KRH72169 | Soybean | cytosol | 60.91 | 55.82 |
| KRH32861 | Soybean | mitochondrion | 59.61 | 55.12 |
| CDY01061 | Canola | cytosol, plastid | 58.96 | 54.03 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 60.59 | 53.76 |
| EER89986 | Sorghum | cytosol | 54.07 | 53.72 |
| EES06503 | Sorghum | cytosol | 54.72 | 53.33 |
| CDY08492 | Canola | cytosol | 58.63 | 53.1 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 55.7 | 52.62 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 26.38 | 52.26 |
| KRH68016 | Soybean | cytosol | 49.51 | 51.7 |
| KRG96271 | Soybean | cytosol, golgi, mitochondrion | 49.51 | 50.5 |
| AT3G52400.1 | Thale cress | cytosol | 54.07 | 48.68 |
| Bra033436.1-P | Field mustard | cytosol | 52.77 | 47.37 |
| CDY23212 | Canola | cytosol | 52.77 | 47.23 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 46.58 | 46.43 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 50.16 | 46.11 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 50.16 | 45.83 |
| EER97312 | Sorghum | cytosol | 43.97 | 44.26 |
| EES16084 | Sorghum | cytosol | 43.97 | 43.97 |
| KXG37622 | Sorghum | cytosol | 44.3 | 43.59 |
| EER98026 | Sorghum | cytosol | 41.37 | 41.91 |
| CDX95336 | Canola | cytosol | 12.38 | 36.19 |
| OQU78880 | Sorghum | cytosol | 28.66 | 28.57 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | EntrezGene:8083912 | UniProt:C5WY64 | ncoils:Coil |
| EnsemblPlants:EER93336 | ProteinID:EER93336 | ProteinID:EER93336.1 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006887 | GO:GO:0006906 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0031201 | GO:GO:0048278 | InterPro:IPR000727 | PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE |
| EnsemblPlantsGene:SORBI_3001G064900 | SUPFAM:SSF47661 | unigene:Sbi.7443 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI0001A82BCE | RefSeq:XP_002466338.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr1:-:4902584..4904409
Molecular Weight (calculated)
33555.8 Da
IEP (calculated)
7.582
GRAVY (calculated)
-0.367
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSLFSSSWK RGGGDDGDIE SGSVEMSAPP GAAAGASLDR FFEDVESIKD ELRDLERIQR SLHDGNEAGK SLHDASAVRD LRARMDADVS AAIKKAKVVK
101: LRLESLDRAN AANRSVPGCG PGSSTDRTRT SVVAGLRKKL RDSMESFSSL RSRVASEYRD TVARRYFTVT GTQPDEATLD ALAESGEGER FLQRAIAEQG
201: RGQVLGVVAE IQERHGAVAE LERSLLELQQ VFNDMAVLVA AQGEQLDDIE GNVGRARSFV DRGREQLQVA RKHQKSTRKW TCIAILILLV IILVIVLPIV
301: LQNTKKN
101: LRLESLDRAN AANRSVPGCG PGSSTDRTRT SVVAGLRKKL RDSMESFSSL RSRVASEYRD TVARRYFTVT GTQPDEATLD ALAESGEGER FLQRAIAEQG
201: RGQVLGVVAE IQERHGAVAE LERSLLELQQ VFNDMAVLVA AQGEQLDDIE GNVGRARSFV DRGREQLQVA RKHQKSTRKW TCIAILILLV IILVIVLPIV
301: LQNTKKN
001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
Arabidopsis Description
SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.