CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12290	Sorghum	cytosol	100.0	100.0
EER88715	Sorghum	cytosol	100.0	100.0
Os02t0162500-01	Rice	nucleus, plasma membrane	99.33	99.33
TraesCS6D01G126300.1	Wheat	cytosol	96.67	96.67
TraesCS6A01G137300.1	Wheat	cytosol	96.67	96.67
HORVU7Hr1G104220.3	Barley	cytosol, plasma membrane	96.67	96.03
TraesCS7B01G355300.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	96.67	96.03
Bra023052.1-P	Field mustard	cytosol	94.0	94.0
Bra034833.1-P	Field mustard	cytosol	94.0	94.0
Bra009165.1-P	Field mustard	cytosol	94.0	94.0
Bra005296.1-P	Field mustard	cytosol	94.0	94.0
Solyc09g010100.2.1	Tomato	cytosol	94.0	94.0
Solyc10g083280.1.1	Tomato	extracellular, nucleus	94.0	94.0
KRG96881	Soybean	cytosol	93.33	93.33
KRG96883	Soybean	endoplasmic reticulum, nucleus	93.33	93.33
Solyc02g070570.2.1	Tomato	nucleus	93.33	93.33
KRH21050	Soybean	cytosol	93.33	93.33
PGSC0003DMT400072364	Potato	cytosol	93.33	93.33
KRH68612	Soybean	cytosol	93.33	93.33
PGSC0003DMT400054512	Potato	cytosol	93.33	93.33
PGSC0003DMT400022864	Potato	cytosol	93.33	93.33
KRH11201	Soybean	nucleus	92.67	92.67
Bra001406.1-P	Field mustard	cytosol	92.67	92.67
AT3G52580.1	Thale cress	cytosol	92.67	92.67
AT3G11510.1	Thale cress	cytosol	92.67	92.67
AT2G36160.1	Thale cress	cytosol	92.0	92.0
Bra002045.1-P	Field mustard	cytosol	94.0	87.04
Zm00001d036568_P001	Maize	cytosol, mitochondrion	98.0	85.96
KRH68609	Soybean	cytosol	93.33	84.34
Zm00001d046583_P001	Maize	endoplasmic reticulum	98.0	81.67
Zm00001d014462_P002	Maize	cytosol	81.33	76.25
KXG20642	Sorghum	cytosol	78.0	73.58
OQU85061	Sorghum	cytosol, nucleus, plastid	60.67	50.84

Protein Annotations

MapMan:17.1.3.1.15	Gene3D:3.30.420.80	EntrezGene:8057471	EntrezGene:8058398	EntrezGene:8069325	UniProt:C5Y9U0
EnsemblPlants:EER88707	ProteinID:EER88707	ProteinID:EER88707.1	ProteinID:EER88715.1	ProteinID:EES12290.1	GO:GO:0000028
GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	GO:GO:0048027
GO:GO:0070181	InterPro:IPR036967	HAMAP:MF_01310	PFAM:PF00411	PIRSF:PIRSF002131	ScanProsite:PS00054
PANTHER:PTHR11759	PANTHER:PTHR11759:SF11	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_CS	InterPro:Ribosomal_S11_sf	EnsemblPlantsGene:SORBI_3010G206200
SUPFAM:SSF53137	unigene:Sbi.17964	unigene:Sbi.18463	unigene:Sbi.18482	UniParc:UPI0001A87311	RefSeq:XP_002437340.1
RefSeq:XP_002437348.1	RefSeq:XP_002447962.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:54918479..54920768

Molecular Weight (calculated)

16391.8 Da

IEP (calculated)

11.220

GRAVY (calculated)

-0.584

Length

150 amino acids

Sequence
(BLAST)

001: MSRRKTREPK EENVTLGPTV REGEYVFGVA HIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLASQDV AQRCKELGIT ALHIKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPVPTDSTR RKGGRRGRRL

Best Arabidopsis Sequence Match ( AT3G52580.1 )
(BLAST)

001: MSKRKTKEPK VENVTLGPAV REGEQVFGVV HVFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AIHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14C40S ribosomal protein S14-3 [Source:UniProtKB/Swiss-Prot;Acc:P42036]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.