CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96881	Soybean	cytosol	99.33	99.33
KRG96883	Soybean	endoplasmic reticulum, nucleus	99.33	99.33
KRH21050	Soybean	cytosol	99.33	99.33
KRH68612	Soybean	cytosol	99.33	99.33
EER88707	Sorghum	cytosol	92.67	92.67
EER88715	Sorghum	cytosol	92.67	92.67
EES12290	Sorghum	cytosol	92.67	92.67
TraesCS6D01G126300.1	Wheat	cytosol	92.67	92.67
Bra005296.1-P	Field mustard	cytosol	92.67	92.67
Bra009165.1-P	Field mustard	cytosol	92.67	92.67
Bra023052.1-P	Field mustard	cytosol	92.67	92.67
TraesCS6A01G137300.1	Wheat	cytosol	92.67	92.67
TraesCS7B01G355300.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	92.67	92.05
HORVU7Hr1G104220.3	Barley	cytosol, plasma membrane	92.67	92.05
Os02t0162500-01	Rice	nucleus, plasma membrane	92.0	92.0
Bra034833.1-P	Field mustard	cytosol	92.0	92.0
Bra001406.1-P	Field mustard	cytosol	91.33	91.33
TraesCS6B01G165600.1	Wheat	cytosol	92.0	90.79
CDX84577	Canola	cytosol	92.0	90.2
CDX84154	Canola	cytosol	92.0	90.2
AT3G52580.1	Thale cress	cytosol	90.0	90.0
KRH68609	Soybean	cytosol	99.33	89.76
AT3G11510.1	Thale cress	cytosol	89.33	89.33
AT2G36160.1	Thale cress	cytosol	88.67	88.67
CDX75067	Canola	cytosol	92.0	87.9
VIT_08s0007g03020.t01	Wine grape	cytosol	94.67	87.12
CDY08517	Canola	cytosol	92.0	86.25
CDX98905	Canola	cytosol	92.0	86.25
Bra002045.1-P	Field mustard	cytosol	91.33	84.57
CDY60438	Canola	cytosol	92.67	83.73
CDY01031	Canola	cytosol	92.67	83.23
Zm00001d036568_P001	Maize	cytosol, mitochondrion	92.0	80.7
CDX73621	Canola	cytosol	92.0	80.23
CDY26067	Canola	cytosol	92.67	79.43
Zm00001d046583_P001	Maize	endoplasmic reticulum	92.67	77.22
CDY71084	Canola	cytosol	50.0	75.76
Zm00001d014462_P002	Maize	cytosol	75.33	70.62
KXG20642	Sorghum	cytosol	73.33	69.18
CDX73872	Canola	cytosol	92.67	65.57
CDY00737	Canola	cytosol	92.67	65.57
CDY71908	Canola	plastid	92.0	63.59
Zm00001d052553_P001	Maize	cytosol	47.33	63.39
Zm00001d036565_P002	Maize	cytosol	84.0	61.16
Zm00001d000104_P001	Maize	cytosol	43.33	58.04
Zm00001d036567_P002	Maize	cytosol	82.67	57.41
CDY43745	Canola	cytosol, plasma membrane	92.0	56.33
HORVU6Hr1G085630.1	Barley	cytosol, nucleus	15.33	54.76
HORVU1Hr1G076240.1	Barley	endoplasmic reticulum, extracellular, vacuole	20.67	44.29
HORVU1Hr1G058980.1	Barley	cytosol	20.67	40.79
HORVU7Hr1G091030.1	Barley	cytosol	20.0	39.47
HORVU6Hr1G026350.1	Barley	cytosol	25.33	33.33

Protein Annotations

MapMan:17.1.3.1.15	Gene3D:3.30.420.80	UniProt:A0A0R0FZ23	EMBL:ACUP02009191	EnsemblPlantsGene:GLYMA_15G095300	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	InterPro:IPR036967	EnsemblPlants:KRH11201	ProteinID:KRH11201	ProteinID:KRH11201.1
HAMAP:MF_01310	PFAM:PF00411	PIRSF:PIRSF002131	ScanProsite:PS00054	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11
InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_CS	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	UniParc:UPI0001AE621B	SEG:seg

Description

hypothetical protein

Coordinates

chr15:-:7434003..7436364

Molecular Weight (calculated)

16323.7 Da

IEP (calculated)

11.604

GRAVY (calculated)

-0.509

Length

150 amino acids

Sequence
(BLAST)

001: MSRRKVREPK EENVTLGPAV RDGEHVFGVA RIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AARCKELGIT ALHIRLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPSDSTR RKSGRRGRRL

Best Arabidopsis Sequence Match ( ATCG00750.1 )
(BLAST)

001: MAKPILRIGS RKNTRSGSRK NVRRIPKGVI HVQASFNNTI VTVTDVRGRV ISWSSAGTCG FRGTRRGTPF AAQTAAGNAI RAVVDQGMQR AEVRIKGPGL
101: GRDAALRAIR RSGILLSFVR DVTPMPHNGC RPPKKRRV

Arabidopsis Description

RPS1130S ribosomal protein S11, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4X8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.