CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005296.1-P	Field mustard	cytosol	97.39	99.33
CDX84577	Canola	cytosol	97.39	97.39
CDX75067	Canola	cytosol	97.39	94.9
AT2G36160.1	Thale cress	cytosol	92.81	94.67
Solyc09g010100.2.1	Tomato	cytosol	91.5	93.33
Solyc10g083280.1.1	Tomato	extracellular, nucleus	91.5	93.33
CDX98905	Canola	cytosol	97.39	93.12
PGSC0003DMT400072364	Potato	cytosol	90.85	92.67
PGSC0003DMT400022864	Potato	cytosol	90.85	92.67
KRG96881	Soybean	cytosol	90.85	92.67
KRG96883	Soybean	endoplasmic reticulum, nucleus	90.85	92.67
KRH21050	Soybean	cytosol	90.85	92.67
KRH68612	Soybean	cytosol	90.85	92.67
CDY08517	Canola	cytosol	96.73	92.5
Solyc02g070570.2.1	Tomato	nucleus	90.2	92.0
PGSC0003DMT400054512	Potato	cytosol	90.2	92.0
KRH11201	Soybean	nucleus	90.2	92.0
CDY60438	Canola	cytosol	97.39	89.76
CDY01031	Canola	cytosol	97.39	89.22
CDX73621	Canola	cytosol	96.73	86.05
VIT_08s0007g03020.t01	Wine grape	cytosol	91.5	85.89
CDY26067	Canola	cytosol	96.08	84.0
KRH68609	Soybean	cytosol	90.85	83.73
CDY71084	Canola	cytosol	52.94	81.82
CDY00737	Canola	cytosol	98.04	70.75
CDX73872	Canola	cytosol	98.04	70.75
CDY71908	Canola	plastid	97.39	68.66
CDY43745	Canola	cytosol, plasma membrane	98.04	61.22
CDY26068	Canola	extracellular	2.61	10.0

Protein Annotations

MapMan:17.1.3.1.15	Gene3D:3.30.420.80	GO:A0A078D702	EnsemblPlants:CDX84154	ProteinID:CDX84154	ProteinID:CDX84154.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00141173001	InterPro:IPR036967	HAMAP:MF_01310	PFAM:PF00411
PIRSF:PIRSF002131	ScanProsite:PS00054	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_CS
InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	UniParc:UPI0004EDCD14	SEG:seg	:	:

Description

BnaC04g09160D

Coordinates

chrLK031836:-:240595..241943

Molecular Weight (calculated)

16603.1 Da

IEP (calculated)

11.360

GRAVY (calculated)

-0.515

Length

153 amino acids

Sequence
(BLAST)

001: MVSSSRRKTR EPKEETVTLG PAVRDGEQVF GVVHIFASFN DTFIHVTDLS GRETLVRITG GMKVKADRDE SSPYAAMLAA QDVAQRCKEL GITAMHVKLR
101: ATGGNKTKTP GPGAQSALRA LARSGMKIGR IEDVTPIPTD STRRKGGRRG RRL

Best Arabidopsis Sequence Match ( AT2G36160.1 )
(BLAST)

001: MSKRKTKEPK VDVVTLGPSV REGEQVFGVV HIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AMHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14A40S ribosomal protein S14-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.