CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84154	Canola	cytosol	84.0	96.08
CDX84577	Canola	cytosol	84.0	96.08
CDX75067	Canola	cytosol	84.57	94.27
AT3G52580.1	Thale cress	cytosol	80.57	94.0
KRH68612	Soybean	cytosol	80.0	93.33
KRH21050	Soybean	cytosol	80.0	93.33
KRG96883	Soybean	endoplasmic reticulum, nucleus	80.0	93.33
KRG96881	Soybean	cytosol	80.0	93.33
CDX98905	Canola	cytosol	85.14	93.12
Solyc09g010100.2.1	Tomato	cytosol	79.43	92.67
Solyc10g083280.1.1	Tomato	extracellular, nucleus	79.43	92.67
KRH11201	Soybean	nucleus	79.43	92.67
PGSC0003DMT400072364	Potato	cytosol	78.86	92.0
PGSC0003DMT400022864	Potato	cytosol	78.86	92.0
CDY08517	Canola	cytosol	84.0	91.88
Solyc02g070570.2.1	Tomato	nucleus	78.29	91.33
PGSC0003DMT400054512	Potato	cytosol	78.29	91.33
CDY60438	Canola	cytosol	85.71	90.36
CDY01031	Canola	cytosol	85.14	89.22
VIT_08s0007g03020.t01	Wine grape	cytosol	81.71	87.73
CDX73621	Canola	cytosol	85.14	86.63
KRH68609	Soybean	cytosol	80.0	84.34
CDY71084	Canola	cytosol	46.86	82.83
CDX73872	Canola	cytosol	86.86	71.7
CDY00737	Canola	cytosol	85.71	70.75
CDY71908	Canola	plastid	85.71	69.12
CDY43745	Canola	cytosol, plasma membrane	84.57	60.41
CDY26068	Canola	extracellular	2.29	10.0

Protein Annotations

MapMan:17.1.3.1.15	Gene3D:3.30.420.80	GO:A0A078GLP4	UniProt:A0A078GLP4	EnsemblPlants:CDY26067	ProteinID:CDY26067
ProteinID:CDY26067.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00034680001	InterPro:IPR036967
HAMAP:MF_01310	PFAM:PF00411	PIRSF:PIRSF002131	ScanProsite:PS00054	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11
InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_CS	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	UniParc:UPI0004EE2BA0	SEG:seg

Description

BnaC06g11290DBnaC06g11290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLP4]

Coordinates

chrLK032185:+:20765..31722

Molecular Weight (calculated)

19325.3 Da

IEP (calculated)

10.519

GRAVY (calculated)

-0.495

Length

175 amino acids

Sequence
(BLAST)

001: MSLIKMFSKD EQEETLDSAL FPFETMSRRK TREPKEETVT LGPAVRDGEQ VFGVVHIFAS FNDTFIHVTD LSGRETLVRI TGGMKVKADR DESSPYAAML
101: AAQDVAQRCK ELGITAMHVK LRATCGNKTK TPGPGAQSAL RALARSGMKI GRIEDVTPIP TDSTRRKSGR RGRRL

Best Arabidopsis Sequence Match ( AT2G36160.1 )
(BLAST)

001: MSKRKTKEPK VDVVTLGPSV REGEQVFGVV HIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AMHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14A40S ribosomal protein S14-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.