CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034833.1-P	Field mustard	cytosol	93.12	99.33
CDX84154	Canola	cytosol	92.5	96.73
CDX84577	Canola	cytosol	92.5	96.73
AT3G11510.1	Thale cress	cytosol	90.0	96.0
CDX75067	Canola	cytosol	93.75	95.54
CDX98905	Canola	cytosol	93.75	93.75
Solyc09g010100.2.1	Tomato	cytosol	87.5	93.33
Solyc10g083280.1.1	Tomato	extracellular, nucleus	87.5	93.33
PGSC0003DMT400072364	Potato	cytosol	86.88	92.67
PGSC0003DMT400022864	Potato	cytosol	86.88	92.67
KRG96881	Soybean	cytosol	86.88	92.67
KRG96883	Soybean	endoplasmic reticulum, nucleus	86.88	92.67
KRH21050	Soybean	cytosol	86.88	92.67
KRH68612	Soybean	cytosol	86.88	92.67
Solyc02g070570.2.1	Tomato	nucleus	86.25	92.0
PGSC0003DMT400054512	Potato	cytosol	86.25	92.0
KRH11201	Soybean	nucleus	86.25	92.0
CDY01031	Canola	cytosol	94.38	90.42
CDY60438	Canola	cytosol	93.12	89.76
CDX73621	Canola	cytosol	95.0	88.37
VIT_08s0007g03020.t01	Wine grape	cytosol	87.5	85.89
CDY26067	Canola	cytosol	91.88	84.0
KRH68609	Soybean	cytosol	86.88	83.73
CDY71084	Canola	cytosol	50.62	81.82
CDY00737	Canola	cytosol	94.38	71.23
CDX73872	Canola	cytosol	94.38	71.23
CDY71908	Canola	plastid	94.38	69.59
CDY43745	Canola	cytosol, plasma membrane	92.5	60.41
CDY26068	Canola	extracellular	2.5	10.0

Protein Annotations

MapMan:17.1.3.1.15	Gene3D:3.30.420.80	GO:A0A078F603	UniProt:A0A078F603	EnsemblPlants:CDY08517	ProteinID:CDY08517
ProteinID:CDY08517.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00000292001	InterPro:IPR036967
HAMAP:MF_01310	PFAM:PF00411	PIRSF:PIRSF002131	ScanProsite:PS00054	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11
InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_CS	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	UniParc:UPI0004EF1CA2	SEG:seg

Description

BnaA05g27530DBnaA05g27530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F603]

Coordinates

chrLK031986:+:532897..534484

Molecular Weight (calculated)

17500.3 Da

IEP (calculated)

11.520

GRAVY (calculated)

-0.482

Length

160 amino acids

Sequence
(BLAST)

001: MTILKTLRLN MSRRKTREPK EETVTLGPAV RDGEQVFGVV HIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT
101: AMHVKLRATG GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPVPTDSTR RKGGRRGRRL

Best Arabidopsis Sequence Match ( AT3G52580.1 )
(BLAST)

001: MSKRKTKEPK VENVTLGPAV REGEQVFGVV HVFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AIHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14C40S ribosomal protein S14-3 [Source:UniProtKB/Swiss-Prot;Acc:P42036]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.