Factsheet for VIT_08s0007g03020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96881	Soybean	cytosol	87.73	95.33
KRG96883	Soybean	endoplasmic reticulum, nucleus	87.73	95.33
KRH68612	Soybean	cytosol	87.73	95.33
KRH21050	Soybean	cytosol	87.73	95.33
KRH11201	Soybean	nucleus	87.12	94.67
Bra005296.1-P	Field mustard	cytosol	86.5	94.0
Bra009165.1-P	Field mustard	cytosol	86.5	94.0
Bra023052.1-P	Field mustard	cytosol	86.5	94.0
Bra001406.1-P	Field mustard	cytosol	85.28	92.67
Bra034833.1-P	Field mustard	cytosol	85.28	92.67
CDX84577	Canola	cytosol	85.89	91.5
CDX84154	Canola	cytosol	85.89	91.5
AT3G11510.1	Thale cress	cytosol	84.05	91.33
AT3G52580.1	Thale cress	cytosol	84.05	91.33
AT2G36160.1	Thale cress	cytosol	83.44	90.67
CDX75067	Canola	cytosol	85.89	89.17
CDX98905	Canola	cytosol	85.89	87.5
CDY08517	Canola	cytosol	85.89	87.5
KRH68609	Soybean	cytosol	87.73	86.14
CDY60438	Canola	cytosol	87.73	86.14
Bra002045.1-P	Field mustard	cytosol	85.28	85.8
CDY01031	Canola	cytosol	87.73	85.63
CDY26067	Canola	cytosol	87.73	81.71
CDX73621	Canola	cytosol	85.89	81.4
CDY71084	Canola	cytosol	47.85	78.79
VIT_06s0080g00740.t01	Wine grape	cytosol	78.53	69.95
CDY00737	Canola	cytosol	88.34	67.92
CDX73872	Canola	cytosol	88.34	67.92
CDY71908	Canola	plastid	87.12	65.44
CDY43745	Canola	cytosol, plasma membrane	85.89	57.14
VIT_17s0000g10380.t01	Wine grape	cytosol	38.04	54.39
VIT_11s0103g00410.t01	Wine grape	cytosol	26.38	43.43
VIT_17s0000g10400.t01	Wine grape	nucleus	6.75	16.92

Protein Annotations

EntrezGene:100256298	wikigene:100256298	MapMan:17.1.3.1.15	Gene3D:3.30.420.80	ProteinID:CBI30323	ProteinID:CBI30323.3
UniProt:D7TJ97	EMBL:FN595991	GO:GO:0000028	GO:GO:0000462	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0022627	GO:GO:0030529	GO:GO:0048027	GO:GO:0070181	InterPro:IPR036967	EntrezGene:LOC100256298
wikigene:LOC100256298	HAMAP:MF_01310	PFAM:PF00411	PIRSF:PIRSF002131	ScanProsite:PS00054	PANTHER:PTHR11759
PANTHER:PTHR11759:SF11	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_CS	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	TIGR:TC66447
UniParc:UPI0001BE3995	ArrayExpress:VIT_08s0007g03020	EnsemblPlantsGene:VIT_08s0007g03020	EnsemblPlants:VIT_08s0007g03020.t01	unigene:Vvi.1434	RefSeq:XP_002282061
RefSeq:XP_002282061.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:+:17073833..17077646

Molecular Weight (calculated)

17881.6 Da

IEP (calculated)

11.171

GRAVY (calculated)

-0.463

Length

163 amino acids

Sequence
(BLAST)

001: MFFVSSIYNP FEAMSRRKVR EPKEENVTLG PTVRDGEHAF GVAHIFASFN DTFIHVTDLS GRETLVRITG GMKVKADRDE SSPYAAMLAA QDVAQRCKEL
101: GITALHIKLR ATGGNKTKTP GPGAQSALRA LARSGMRIGR IEDVTPIPTD STRRKGGRRG RRL

Best Arabidopsis Sequence Match ( AT3G52580.1 )
(BLAST)

001: MSKRKTKEPK VENVTLGPAV REGEQVFGVV HVFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AIHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14C40S ribosomal protein S14-3 [Source:UniProtKB/Swiss-Prot;Acc:P42036]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.