CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96881	Soybean	cytosol	100.0	100.0
KRG96883	Soybean	endoplasmic reticulum, nucleus	100.0	100.0
KRH21050	Soybean	cytosol	100.0	100.0
KRH11201	Soybean	nucleus	99.33	99.33
EER88707	Sorghum	cytosol	93.33	93.33
EER88715	Sorghum	cytosol	93.33	93.33
EES12290	Sorghum	cytosol	93.33	93.33
TraesCS6D01G126300.1	Wheat	cytosol	93.33	93.33
Bra005296.1-P	Field mustard	cytosol	93.33	93.33
Bra009165.1-P	Field mustard	cytosol	93.33	93.33
Bra023052.1-P	Field mustard	cytosol	93.33	93.33
TraesCS6A01G137300.1	Wheat	cytosol	93.33	93.33
TraesCS7B01G355300.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	93.33	92.72
HORVU7Hr1G104220.3	Barley	cytosol, plasma membrane	93.33	92.72
Os02t0162500-01	Rice	nucleus, plasma membrane	92.67	92.67
Bra034833.1-P	Field mustard	cytosol	92.67	92.67
Bra001406.1-P	Field mustard	cytosol	92.0	92.0
TraesCS6B01G165600.1	Wheat	cytosol	92.67	91.45
CDX84577	Canola	cytosol	92.67	90.85
CDX84154	Canola	cytosol	92.67	90.85
AT3G52580.1	Thale cress	cytosol	90.67	90.67
KRH68609	Soybean	cytosol	100.0	90.36
AT3G11510.1	Thale cress	cytosol	90.0	90.0
AT2G36160.1	Thale cress	cytosol	89.33	89.33
CDX75067	Canola	cytosol	92.67	88.53
VIT_08s0007g03020.t01	Wine grape	cytosol	95.33	87.73
CDY08517	Canola	cytosol	92.67	86.88
CDX98905	Canola	cytosol	92.67	86.88
Bra002045.1-P	Field mustard	cytosol	92.0	85.19
CDY60438	Canola	cytosol	93.33	84.34
CDY01031	Canola	cytosol	93.33	83.83
Zm00001d036568_P001	Maize	cytosol, mitochondrion	92.67	81.29
CDX73621	Canola	cytosol	92.67	80.81
CDY26067	Canola	cytosol	93.33	80.0
Zm00001d046583_P001	Maize	endoplasmic reticulum	93.33	77.78
CDY71084	Canola	cytosol	50.67	76.77
Zm00001d014462_P002	Maize	cytosol	76.0	71.25
KXG20642	Sorghum	cytosol	74.0	69.81
CDX73872	Canola	cytosol	93.33	66.04
CDY00737	Canola	cytosol	93.33	66.04
Zm00001d052553_P001	Maize	cytosol	48.0	64.29
CDY71908	Canola	plastid	92.67	64.06
Zm00001d036565_P002	Maize	cytosol	84.67	61.65
Zm00001d000104_P001	Maize	cytosol	44.0	58.93
Zm00001d036567_P002	Maize	cytosol	83.33	57.87
CDY43745	Canola	cytosol, plasma membrane	92.67	56.73
HORVU6Hr1G085630.1	Barley	cytosol, nucleus	15.33	54.76
HORVU1Hr1G076240.1	Barley	endoplasmic reticulum, extracellular, vacuole	20.67	44.29
HORVU1Hr1G058980.1	Barley	cytosol	20.67	40.79
HORVU7Hr1G091030.1	Barley	cytosol	20.0	39.47
HORVU6Hr1G026350.1	Barley	cytosol	25.33	33.33

Protein Annotations

EntrezGene:100499665	EntrezGene:100780604	EntrezGene:100785807	EntrezGene:100786325	EntrezGene:100787077	MapMan:17.1.3.1.15
Gene3D:3.30.420.80	EMBL:ACUP02002121	EMBL:ACUP02008334	EMBL:ACUP02012167	EMBL:BT089087	EMBL:BT096999
UniProt:C6SV94	EnsemblPlantsGene:GLYMA_03G241300	GO:GO:0000028	GO:GO:0000462	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0022627	GO:GO:0030529	GO:GO:0048027	GO:GO:0070181	InterPro:IPR036967	ProteinID:KRG96881.1
ProteinID:KRG96883.1	ProteinID:KRH21050.1	ProteinID:KRH68610.1	EnsemblPlants:KRH68612	ProteinID:KRH68612	ProteinID:KRH68612.1
HAMAP:MF_01310	PFAM:PF00411	PIRSF:PIRSF002131	ScanProsite:PS00054	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11
InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_CS	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	UniParc:UPI0001AE621A	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:43960682..43962962

Molecular Weight (calculated)

16295.7 Da

IEP (calculated)

11.497

GRAVY (calculated)

-0.505

Length

150 amino acids

Sequence
(BLAST)

001: MSRRKVREPK EENVTLGPAV RDGEHVFGVA RIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AARCKELGIT ALHIKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPSDSTR RKSGRRGRRL

Best Arabidopsis Sequence Match ( AT3G52580.1 )
(BLAST)

001: MSKRKTKEPK VENVTLGPAV REGEQVFGVV HVFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AIHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14C40S ribosomal protein S14-3 [Source:UniProtKB/Swiss-Prot;Acc:P42036]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.