CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034833.1-P	Field mustard	cytosol	88.62	98.67
CDX84154	Canola	cytosol	89.22	97.39
CDX84577	Canola	cytosol	89.22	97.39
AT3G11510.1	Thale cress	cytosol	86.83	96.67
CDX75067	Canola	cytosol	89.22	94.9
CDY08517	Canola	cytosol	90.42	94.38
Solyc10g083280.1.1	Tomato	extracellular, nucleus	84.43	94.0
Solyc09g010100.2.1	Tomato	cytosol	84.43	94.0
CDX98905	Canola	cytosol	89.82	93.75
KRH21050	Soybean	cytosol	83.83	93.33
KRG96883	Soybean	endoplasmic reticulum, nucleus	83.83	93.33
KRG96881	Soybean	cytosol	83.83	93.33
KRH68612	Soybean	cytosol	83.83	93.33
PGSC0003DMT400022864	Potato	cytosol	83.83	93.33
PGSC0003DMT400072364	Potato	cytosol	83.83	93.33
PGSC0003DMT400054512	Potato	cytosol	83.23	92.67
Solyc02g070570.2.1	Tomato	nucleus	83.23	92.67
KRH11201	Soybean	nucleus	83.23	92.67
CDY60438	Canola	cytosol	90.42	90.96
VIT_08s0007g03020.t01	Wine grape	cytosol	85.63	87.73
CDX73621	Canola	cytosol	89.22	86.63
CDY26067	Canola	cytosol	89.22	85.14
KRH68609	Soybean	cytosol	83.83	84.34
CDY71084	Canola	cytosol	48.5	81.82
CDY00737	Canola	cytosol	92.81	73.11
CDX73872	Canola	cytosol	92.81	73.11
CDY71908	Canola	plastid	94.01	72.35
CDY43745	Canola	cytosol, plasma membrane	89.82	61.22
CDY26068	Canola	extracellular	2.4	10.0

Protein Annotations

MapMan:17.1.3.1.15	Gene3D:3.30.420.80	GO:A0A078EIW2	EnsemblPlants:CDY01031	ProteinID:CDY01031	ProteinID:CDY01031.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00111058001	InterPro:IPR036967	HAMAP:MF_01310	PFAM:PF00411
PIRSF:PIRSF002131	ScanProsite:PS00054	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_CS
InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	UniParc:UPI0004EEC607	SEG:seg	:	:

Description

BnaC05g41690D

Coordinates

chrLK031923:-:792607..794047

Molecular Weight (calculated)

18543.5 Da

IEP (calculated)

11.223

GRAVY (calculated)

-0.428

Length

167 amino acids

Sequence
(BLAST)

001: MIFFYYFHFV SRHPLLNMSR RKTREPKEET VTLGPAVRDG EQVFGVVHIF ASFNDTFIHV TDLSGRETLV RITGGMKVKA DRDESSPYAA MLAAQDVAQR
101: CKELGITAMH VKLRATGGNK TKTPGPGAQS ALRALARSGM KIGRIEDVTP IPTDSTRRKG GRRGRRL

Best Arabidopsis Sequence Match ( AT3G11510.1 )
(BLAST)

001: MSKRKTKEPK VETVTLGPSV REGEQVFGVV HIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AMHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14BAt3g11510 [Source:UniProtKB/TrEMBL;Acc:Q1H555]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.