CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005296.1-P	Field mustard	cytosol	94.9	99.33
CDX84154	Canola	cytosol	94.9	97.39
CDX84577	Canola	cytosol	94.9	97.39
AT2G36160.1	Thale cress	cytosol	90.45	94.67
CDY08517	Canola	cytosol	95.54	93.75
CDX98905	Canola	cytosol	95.54	93.75
Solyc09g010100.2.1	Tomato	cytosol	89.17	93.33
Solyc10g083280.1.1	Tomato	extracellular, nucleus	89.17	93.33
PGSC0003DMT400072364	Potato	cytosol	88.53	92.67
PGSC0003DMT400022864	Potato	cytosol	88.53	92.67
KRG96881	Soybean	cytosol	88.53	92.67
KRG96883	Soybean	endoplasmic reticulum, nucleus	88.53	92.67
KRH21050	Soybean	cytosol	88.53	92.67
KRH68612	Soybean	cytosol	88.53	92.67
Solyc02g070570.2.1	Tomato	nucleus	87.9	92.0
PGSC0003DMT400054512	Potato	cytosol	87.9	92.0
KRH11201	Soybean	nucleus	87.9	92.0
CDY60438	Canola	cytosol	94.9	89.76
CDY01031	Canola	cytosol	94.9	89.22
CDX73621	Canola	cytosol	94.27	86.05
VIT_08s0007g03020.t01	Wine grape	cytosol	89.17	85.89
CDY26067	Canola	cytosol	94.27	84.57
KRH68609	Soybean	cytosol	88.53	83.73
CDY71084	Canola	cytosol	51.59	81.82
CDY00737	Canola	cytosol	94.9	70.28
CDX73872	Canola	cytosol	94.9	70.28
CDY71908	Canola	plastid	94.27	68.2
CDY43745	Canola	cytosol, plasma membrane	95.54	61.22
CDY26068	Canola	extracellular	2.55	10.0

Protein Annotations

MapMan:17.1.3.1.15	Gene3D:3.30.420.80	GO:A0A078CE12	EnsemblPlants:CDX75067	ProteinID:CDX75067	ProteinID:CDX75067.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00117101001	InterPro:IPR036967	HAMAP:MF_01310	PFAM:PF00411
PIRSF:PIRSF002131	ScanProsite:PS00054	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_CS
InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	UniParc:UPI0004EF07CA	SEG:seg	:	:

Description

BnaA05g08130D

Coordinates

chrLK031802:-:2299829..2301128

Molecular Weight (calculated)

17102.8 Da

IEP (calculated)

11.358

GRAVY (calculated)

-0.488

Length

157 amino acids

Sequence
(BLAST)

001: MLGLRYLGSR RKTREPKEET VTLGPAVRDG EQVFGVVHIF ASFNDTFIHV TDLSGRETLV RITGGMKVKA DRDESSPYAA MLAAQDVAQR CKELGITAMH
101: VKLRATGGNK TKTPGPGAQS ALRALARSGM KIGRIEDVTP IPTDSTRRKG GRRGRRL

Best Arabidopsis Sequence Match ( ATCG00750.1 )
(BLAST)

001: MAKPILRIGS RKNTRSGSRK NVRRIPKGVI HVQASFNNTI VTVTDVRGRV ISWSSAGTCG FRGTRRGTPF AAQTAAGNAI RAVVDQGMQR AEVRIKGPGL
101: GRDAALRAIR RSGILLSFVR DVTPMPHNGC RPPKKRRV

Arabidopsis Description

RPS1130S ribosomal protein S11, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4X8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.