CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005296.1-P	Field mustard	cytosol	60.82	99.33
CDX84154	Canola	cytosol	61.22	98.04
CDX84577	Canola	cytosol	60.82	97.39
CDX75067	Canola	cytosol	61.22	95.54
AT2G36160.1	Thale cress	cytosol	57.96	94.67
CDX98905	Canola	cytosol	61.22	93.75
Solyc09g010100.2.1	Tomato	cytosol	57.14	93.33
Solyc10g083280.1.1	Tomato	extracellular, nucleus	57.14	93.33
PGSC0003DMT400072364	Potato	cytosol	56.73	92.67
KRG96881	Soybean	cytosol	56.73	92.67
KRG96883	Soybean	endoplasmic reticulum, nucleus	56.73	92.67
KRH21050	Soybean	cytosol	56.73	92.67
PGSC0003DMT400022864	Potato	cytosol	56.73	92.67
KRH68612	Soybean	cytosol	56.73	92.67
CDY08517	Canola	cytosol	60.41	92.5
Solyc02g070570.2.1	Tomato	nucleus	56.33	92.0
PGSC0003DMT400054512	Potato	cytosol	56.33	92.0
KRH11201	Soybean	nucleus	56.33	92.0
CDY60438	Canola	cytosol	61.22	90.36
CDY01031	Canola	cytosol	61.22	89.82
CDX73621	Canola	cytosol	61.22	87.21
VIT_08s0007g03020.t01	Wine grape	cytosol	57.14	85.89
CDY26067	Canola	cytosol	60.41	84.57
KRH68609	Soybean	cytosol	56.73	83.73
CDY71084	Canola	cytosol	33.06	81.82
CDY00737	Canola	cytosol	62.04	71.7
CDX73872	Canola	cytosol	61.63	71.23
CDY71908	Canola	plastid	62.45	70.51
CDY26068	Canola	extracellular	1.63	10.0

Protein Annotations

MapMan:17.1.3.1.15	Gene3D:3.30.420.80	GO:A0A078HYT7	UniProt:A0A078HYT7	EnsemblPlants:CDY43745	ProteinID:CDY43745
ProteinID:CDY43745.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00077239001	InterPro:IPR036967
HAMAP:MF_01310	PFAM:PF00411	ScanProsite:PS00054	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11	InterPro:Ribosomal_S11
InterPro:Ribosomal_S11_CS	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	UniParc:UPI0004EE702F	SEG:seg	:

Description

BnaAnng07600DBnaAnng07600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYT7]

Coordinates

chrLK032567:-:181898..183863

Molecular Weight (calculated)

27202.8 Da

IEP (calculated)

11.027

GRAVY (calculated)

-0.549

Length

245 amino acids

Sequence
(BLAST)

001: MSELNHPFHN SLSELPNILF GIPQKPNRVD PNQFGGFKRI SEITDTNITD TRNIKAYFKN HNLVRHGHST TRTRGSFISF TCPKPCIHMI VCLRSESRRK
101: TREPKEETVT LGPAVRDGEQ VFGVVHIFAS FNDTFIHVTD LSGRETLVRI TGGMKVKADR DESSPYAAML AAQDVAQRCK ELGITAMHVK LRATGGNKTK
201: TPGPGAQSAL RALARSGMKI GRIEDVTPIP TDSTRRKGGR RGRRL

Best Arabidopsis Sequence Match ( ATCG00750.1 )
(BLAST)

001: MAKPILRIGS RKNTRSGSRK NVRRIPKGVI HVQASFNNTI VTVTDVRGRV ISWSSAGTCG FRGTRRGTPF AAQTAAGNAI RAVVDQGMQR AEVRIKGPGL
101: GRDAALRAIR RSGILLSFVR DVTPMPHNGC RPPKKRRV

Arabidopsis Description

RPS1130S ribosomal protein S11, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4X8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.